Atomistry » Fluorine » PDB 8aek-8b98 » 8ayy
Atomistry »
  Fluorine »
    PDB 8aek-8b98 »
      8ayy »

Fluorine in PDB 8ayy: Poliovirus Type 3 (Strain Saukett) Stabilised Virus-Like Particle (PV3 SC8) in Complex with Gsh and Pleconaril

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Poliovirus Type 3 (Strain Saukett) Stabilised Virus-Like Particle (PV3 SC8) in Complex with Gsh and Pleconaril (pdb code 8ayy). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Poliovirus Type 3 (Strain Saukett) Stabilised Virus-Like Particle (PV3 SC8) in Complex with Gsh and Pleconaril, PDB code: 8ayy:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 8ayy

Go back to Fluorine Binding Sites List in 8ayy
Fluorine binding site 1 out of 3 in the Poliovirus Type 3 (Strain Saukett) Stabilised Virus-Like Particle (PV3 SC8) in Complex with Gsh and Pleconaril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Poliovirus Type 3 (Strain Saukett) Stabilised Virus-Like Particle (PV3 SC8) in Complex with Gsh and Pleconaril within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:21.0
occ:1.00
F1 A:W11401 0.0 21.0 1.0
CM4 A:W11401 1.3 21.0 1.0
F3 A:W11401 2.1 21.0 1.0
F2 A:W11401 2.1 21.0 1.0
C3A A:W11401 2.4 21.0 1.0
N3A A:W11401 3.1 21.0 1.0
O1A A:W11401 3.3 21.0 1.0
N A:TYR157 3.4 19.8 1.0
CB A:TYR157 3.4 19.8 1.0
O A:ILE155 3.6 20.1 1.0
O A:PRO179 3.7 19.4 1.0
C A:MET156 3.8 20.5 1.0
CA A:TYR157 3.9 19.8 1.0
CA A:MET156 4.1 20.5 1.0
C A:ILE155 4.2 20.1 1.0
CD2 A:LEU239 4.2 20.5 1.0
C2A A:W11401 4.2 21.0 1.0
C A:PRO179 4.3 19.4 1.0
N A:MET156 4.3 20.5 1.0
CG2 A:ILE155 4.4 20.1 1.0
N1A A:W11401 4.4 21.0 1.0
CA A:SER180 4.4 18.8 1.0
O A:MET156 4.5 20.5 1.0
CG1 A:ILE181 4.6 18.8 1.0
N A:SER180 4.6 18.8 1.0
CD1 A:ILE181 4.7 18.8 1.0
CG A:TYR157 4.7 19.8 1.0
N A:ILE181 4.8 18.8 1.0
C A:SER180 4.9 18.8 1.0
CG A:PRO179 4.9 19.4 1.0
CB A:PRO179 5.0 19.4 1.0
CB A:ILE155 5.0 20.1 1.0

Fluorine binding site 2 out of 3 in 8ayy

Go back to Fluorine Binding Sites List in 8ayy
Fluorine binding site 2 out of 3 in the Poliovirus Type 3 (Strain Saukett) Stabilised Virus-Like Particle (PV3 SC8) in Complex with Gsh and Pleconaril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Poliovirus Type 3 (Strain Saukett) Stabilised Virus-Like Particle (PV3 SC8) in Complex with Gsh and Pleconaril within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:21.0
occ:1.00
F2 A:W11401 0.0 21.0 1.0
CM4 A:W11401 1.3 21.0 1.0
F3 A:W11401 2.1 21.0 1.0
F1 A:W11401 2.1 21.0 1.0
C3A A:W11401 2.4 21.0 1.0
O1A A:W11401 2.6 21.0 1.0
CG1 A:ILE181 3.5 18.8 1.0
N3A A:W11401 3.6 21.0 1.0
CD1 A:ILE181 3.7 18.8 1.0
C A:PRO179 4.0 19.4 1.0
CB A:PRO179 4.0 19.4 1.0
N1A A:W11401 4.0 21.0 1.0
O A:PRO179 4.0 19.4 1.0
N A:SER180 4.0 18.8 1.0
CA A:SER180 4.2 18.8 1.0
C A:SER180 4.2 18.8 1.0
CB C:ALA24 4.3 20.2 1.0
C2A A:W11401 4.3 21.0 1.0
N A:ILE181 4.4 18.8 1.0
CG A:PRO179 4.4 19.4 1.0
O A:SER180 4.6 18.8 1.0
O A:ILE155 4.6 20.1 1.0
CA A:PRO179 4.7 19.4 1.0
CB A:ILE181 4.8 18.8 1.0
CB A:TYR157 4.8 19.8 1.0

Fluorine binding site 3 out of 3 in 8ayy

Go back to Fluorine Binding Sites List in 8ayy
Fluorine binding site 3 out of 3 in the Poliovirus Type 3 (Strain Saukett) Stabilised Virus-Like Particle (PV3 SC8) in Complex with Gsh and Pleconaril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Poliovirus Type 3 (Strain Saukett) Stabilised Virus-Like Particle (PV3 SC8) in Complex with Gsh and Pleconaril within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:21.0
occ:1.00
F3 A:W11401 0.0 21.0 1.0
CM4 A:W11401 1.3 21.0 1.0
F1 A:W11401 2.1 21.0 1.0
F2 A:W11401 2.1 21.0 1.0
C3A A:W11401 2.3 21.0 1.0
N3A A:W11401 2.9 21.0 1.0
CD1 A:ILE181 3.1 18.8 1.0
O1A A:W11401 3.4 21.0 1.0
CG1 A:ILE181 3.6 18.8 1.0
C2A A:W11401 4.2 21.0 1.0
CZ A:PHE134 4.3 18.9 1.0
CG1 A:ILE192 4.3 19.7 1.0
CG2 A:ILE155 4.4 20.1 1.0
N1A A:W11401 4.4 21.0 1.0
CD1 A:ILE192 4.5 19.7 1.0
CE1 A:PHE134 4.6 18.9 1.0
O A:ILE155 4.6 20.1 1.0
CB A:ILE181 4.7 18.8 1.0
CD2 A:LEU239 4.9 20.5 1.0
CG2 A:ILE192 4.9 19.7 1.0

Reference:

M.W.Bahar, V.Nasta, H.Fox, L.Sherry, K.Grehan, C.Porta, A.J.Macadam, N.J.Stonehouse, D.J.Rowlands, E.E.Fry, D.I.Stuart. A Conserved Glutathione Binding Site in Poliovirus Is A Target For Antivirals and Vaccine Stabilisation. Commun Biol V. 5 1293 2022.
ISSN: ESSN 2399-3642
PubMed: 36434067
DOI: 10.1038/S42003-022-04252-5
Page generated: Wed Jul 16 02:44:51 2025

Last articles

Na in 1VI6
Na in 1VKG
Na in 1VMJ
Na in 1VMH
Na in 1VMF
Na in 1VLM
Na in 1VK1
Na in 1VIZ
Na in 1VEL
Na in 1VE8
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy