Fluorine in PDB 8fhx: Structure of Lettuce Aptamer Bound to Dfhbi-1T

The structure of Structure of Lettuce Aptamer Bound to Dfhbi-1T, PDB code: 8fhx was solved by L.F.M.Passalacqua, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.61 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	25.015, 44.417, 118.921, 90, 90, 90
R / Rfree (%)	22.5 / 26.8

The structure of Structure of Lettuce Aptamer Bound to Dfhbi-1T also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Potassium	(K)	2 atoms

The binding sites of Fluorine atom in the Structure of Lettuce Aptamer Bound to Dfhbi-1T (pdb code 8fhx). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 5 binding sites of Fluorine where determined in the Structure of Lettuce Aptamer Bound to Dfhbi-1T, PDB code: 8fhx:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5;

Fluorine binding site 1 out of 5 in the Structure of Lettuce Aptamer Bound to Dfhbi-1T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Lettuce Aptamer Bound to Dfhbi-1T within 5.0Å range: probe atom residue distance (Å) B Occ A:F107 b:42.3 occ:1.00 F8 A:2ZY107 0.0 42.3 1.0 C6 A:2ZY107 1.4 40.9 1.0 C1 A:2ZY107 2.4 40.4 1.0 C5 A:2ZY107 2.4 36.4 1.0 O9 A:2ZY107 2.8 33.9 1.0 N6 A:DA11 3.0 34.3 1.0 N3 A:DC17 3.1 40.0 1.0 C4 A:DC17 3.2 38.2 1.0 C2 A:DC17 3.3 47.4 1.0 N1 A:DG18 3.4 35.9 1.0 C5 A:DC17 3.4 39.2 1.0 N1 A:DC17 3.6 46.9 1.0 C2 A:DG18 3.6 38.5 1.0 C6 A:DC17 3.6 41.8 1.0 C2 A:2ZY107 3.6 40.1 1.0 C4 A:2ZY107 3.6 40.7 1.0 N4 A:DC17 3.8 37.6 1.0 C6 A:DG18 3.8 34.0 1.0 N2 A:DG18 3.9 38.0 1.0 O2 A:DC17 4.0 55.9 1.0 N3 A:DG18 4.1 38.7 1.0 C3 A:2ZY107 4.1 39.9 1.0 C5 A:DG18 4.2 34.2 1.0 C2' A:DC17 4.2 51.4 1.0 O6 A:DG18 4.3 34.9 1.0 C4 A:DG18 4.3 35.3 1.0 C6 A:DA11 4.3 33.9 1.0 C1' A:DC17 4.5 50.1 1.0 F7 A:2ZY107 4.8 34.6 1.0 N7 A:DG10 4.8 34.6 1.0 K A:K102 4.9 38.0 1.0 C10 A:2ZY107 4.9 47.7 1.0 O6 A:DG10 4.9 32.2 1.0

Fluorine binding site 2 out of 5 in the Structure of Lettuce Aptamer Bound to Dfhbi-1T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Lettuce Aptamer Bound to Dfhbi-1T within 5.0Å range: probe atom residue distance (Å) B Occ A:F107 b:34.6 occ:1.00 F7 A:2ZY107 0.0 34.6 1.0 C4 A:2ZY107 1.4 40.7 1.0 C3 A:2ZY107 2.4 39.9 1.0 C5 A:2ZY107 2.4 36.4 1.0 O9 A:2ZY107 2.8 33.9 1.0 C2 A:DG25 3.0 34.2 1.0 N1 A:DG25 3.0 32.9 1.0 N2 A:DG44 3.0 35.0 1.0 C6 A:DG26 3.2 43.9 0.5 O6 A:DG26 3.2 43.3 0.5 O6 A:DG26 3.2 43.0 0.5 C6 A:DG26 3.3 44.0 0.5 C5 A:DG26 3.3 41.9 0.5 C5 A:DG26 3.4 42.2 0.5 N2 A:DG25 3.4 37.2 1.0 N3 A:DG25 3.4 36.2 1.0 C6 A:DG25 3.5 32.5 1.0 O6 A:DG18 3.5 34.9 1.0 N7 A:DG26 3.5 38.4 0.5 N7 A:DG26 3.5 38.6 0.5 C6 A:2ZY107 3.7 40.9 1.0 C2 A:2ZY107 3.7 40.1 1.0 C4 A:DG25 3.7 38.7 1.0 C5 A:DG25 3.8 35.2 1.0 K A:K102 3.8 38.0 1.0 N1 A:DG26 3.9 45.2 0.5 O A:HOH210 3.9 34.5 1.0 N1 A:DG26 4.0 45.4 0.5 C4 A:DG26 4.1 44.5 0.5 O6 A:DG25 4.1 31.8 1.0 C1 A:2ZY107 4.1 40.4 1.0 C4 A:DG26 4.2 44.7 0.5 C6 A:DG18 4.2 34.0 1.0 C2 A:DG44 4.3 39.5 1.0 C8 A:DG26 4.3 43.5 0.5 C8 A:DG26 4.3 43.7 0.5 O A:HOH214 4.5 32.8 1.0 N7 A:DG18 4.5 37.6 1.0 C2 A:DG26 4.5 46.9 0.5 N9 A:DG26 4.6 45.8 0.5 C5 A:DG18 4.7 34.2 1.0 N9 A:DG25 4.7 36.1 1.0 N3 A:DG26 4.7 47.1 0.5 N1 A:DG44 4.7 37.8 1.0 C2 A:DG26 4.7 46.9 0.5 N9 A:DG26 4.7 45.9 0.5 F8 A:2ZY107 4.8 42.3 1.0 N7 A:DG25 4.8 34.0 1.0 N12 A:2ZY107 4.8 43.5 1.0 N3 A:DG26 4.8 47.3 0.5 N4 A:DC17 4.9 37.6 1.0 C10 A:2ZY107 5.0 47.7 1.0

Fluorine binding site 3 out of 5 in the Structure of Lettuce Aptamer Bound to Dfhbi-1T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Lettuce Aptamer Bound to Dfhbi-1T within 5.0Å range: probe atom residue distance (Å) B Occ A:F107 b:100.7 occ:1.00 F20 A:2ZY107 0.0 100.7 1.0 C19 A:2ZY107 1.4 75.3 1.0 F22 A:2ZY107 2.2 62.5 1.0 F21 A:2ZY107 2.2 62.2 1.0 C16 A:2ZY107 2.4 61.1 1.0 N14 A:2ZY107 3.6 48.1 1.0 O18 A:2ZY107 4.3 54.9 1.0 C15 A:2ZY107 4.4 50.0 1.0 C13 A:2ZY107 4.7 43.6 1.0 O4' A:DC20 4.8 54.5 1.0 C6 A:DC20 4.9 45.1 1.0

Fluorine binding site 4 out of 5 in the Structure of Lettuce Aptamer Bound to Dfhbi-1T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Lettuce Aptamer Bound to Dfhbi-1T within 5.0Å range: probe atom residue distance (Å) B Occ A:F107 b:62.2 occ:1.00 F21 A:2ZY107 0.0 62.2 1.0 C19 A:2ZY107 1.4 75.3 1.0 F22 A:2ZY107 2.2 62.5 1.0 F20 A:2ZY107 2.2 100.7 1.0 C16 A:2ZY107 2.4 61.1 1.0 N14 A:2ZY107 2.7 48.1 1.0 O18 A:2ZY107 2.7 54.9 1.0 C15 A:2ZY107 2.9 50.0 1.0 C13 A:2ZY107 3.8 43.6 1.0 C5' A:DG19 4.0 48.9 1.0 C11 A:2ZY107 4.1 48.9 1.0 C4' A:DG19 4.3 44.2 1.0 C5 A:DC20 4.3 44.7 1.0 O4' A:DG19 4.5 37.8 1.0 N12 A:2ZY107 4.5 43.5 1.0 C6 A:DC20 4.6 45.1 1.0 OP1 A:DG19 4.6 65.2 1.0 C17 A:2ZY107 4.7 47.5 1.0 C8 A:DG18 4.8 40.1 1.0 C4 A:DC20 4.9 47.7 1.0 C1' A:DG18 4.9 38.4 1.0 C10 A:2ZY107 5.0 47.7 1.0

Fluorine binding site 5 out of 5 in the Structure of Lettuce Aptamer Bound to Dfhbi-1T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Lettuce Aptamer Bound to Dfhbi-1T within 5.0Å range: probe atom residue distance (Å) B Occ A:F107 b:62.5 occ:1.00 F22 A:2ZY107 0.0 62.5 1.0 C19 A:2ZY107 1.4 75.3 1.0 F20 A:2ZY107 2.2 100.7 1.0 F21 A:2ZY107 2.2 62.2 1.0 C16 A:2ZY107 2.4 61.1 1.0 N14 A:2ZY107 2.9 48.1 1.0 C5 A:DC20 3.0 44.7 1.0 C6 A:DC20 3.1 45.1 1.0 C4 A:DC20 3.3 47.7 1.0 N1 A:DC20 3.4 49.1 1.0 C13 A:2ZY107 3.4 43.6 1.0 C17 A:2ZY107 3.5 47.5 1.0 N3 A:DC20 3.6 50.4 1.0 C2 A:DC20 3.6 54.3 1.0 C15 A:2ZY107 3.9 50.0 1.0 N4 A:DC20 4.0 51.6 1.0 O4' A:DC20 4.1 54.5 1.0 C1' A:DC20 4.2 51.4 1.0 O18 A:2ZY107 4.4 54.9 1.0 O2 A:DC20 4.5 53.0 1.0 N12 A:2ZY107 4.6 43.5 1.0 C4' A:DG19 4.8 44.2 1.0 C11 A:2ZY107 4.8 48.9 1.0 O4' A:DG19 4.9 37.8 1.0

L.F.M.Passalacqua, A.R.Ferre-D'amare. Structure of Lettuce Aptamer Bound to Dfhbi-1T To Be Published.