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Fluorine in PDB 8fi7: Structure of Lettuce C20T Bound to Dfho

Protein crystallography data

The structure of Structure of Lettuce C20T Bound to Dfho, PDB code: 8fi7 was solved by L.F.M.Passalacqua, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.77 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.571, 43.104, 117.641, 90, 90, 90
R / Rfree (%) 24.4 / 28.9

Other elements in 8fi7:

The structure of Structure of Lettuce C20T Bound to Dfho also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Potassium (K) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Lettuce C20T Bound to Dfho (pdb code 8fi7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Structure of Lettuce C20T Bound to Dfho, PDB code: 8fi7:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 8fi7

Go back to Fluorine Binding Sites List in 8fi7
Fluorine binding site 1 out of 2 in the Structure of Lettuce C20T Bound to Dfho


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Lettuce C20T Bound to Dfho within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F106

b:40.8
occ:1.00
F1 A:747106 0.0 40.8 1.0
C2 A:747106 1.4 33.6 1.0
C3 A:747106 2.4 37.5 1.0
C1 A:747106 2.4 31.3 1.0
O1 A:747106 2.8 29.8 1.0
C4 A:DC17 3.0 39.4 1.0
C5 A:DC17 3.1 39.9 1.0
N3 A:DC17 3.2 42.9 1.0
C6 A:DC17 3.3 42.0 1.0
C2 A:DC17 3.4 44.4 1.0
N1 A:DC17 3.4 40.8 1.0
N6 A:DA11 3.5 31.2 1.0
N1 A:DG18 3.5 31.3 1.0
C2 A:DG18 3.6 32.1 1.0
N4 A:DC17 3.6 37.4 1.0
C A:747106 3.7 33.4 1.0
C4 A:747106 3.7 39.2 1.0
C6 A:DG18 3.8 28.3 1.0
N3 A:DG18 3.9 33.2 1.0
N2 A:DG18 4.0 37.9 1.0
C5 A:DG18 4.1 29.5 1.0
C4 A:DG18 4.1 33.1 1.0
O2 A:DC17 4.2 45.3 1.0
C5 A:747106 4.2 34.0 1.0
C2' A:DC17 4.3 52.5 1.0
O6 A:DG18 4.3 31.5 1.0
C1' A:DC17 4.4 48.7 1.0
F A:747106 4.8 30.1 1.0
C3' A:DC17 4.8 56.7 1.0
C6 A:DA11 4.8 29.9 1.0
N1 A:DG26 4.9 38.7 1.0
N7 A:DG18 4.9 37.1 1.0
C6 A:747106 4.9 48.5 1.0
N9 A:DG18 5.0 34.9 1.0

Fluorine binding site 2 out of 2 in 8fi7

Go back to Fluorine Binding Sites List in 8fi7
Fluorine binding site 2 out of 2 in the Structure of Lettuce C20T Bound to Dfho


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Lettuce C20T Bound to Dfho within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F106

b:30.1
occ:1.00
F A:747106 0.0 30.1 1.0
C A:747106 1.4 33.4 1.0
C1 A:747106 2.4 31.3 1.0
C5 A:747106 2.4 34.0 1.0
N1 A:DG25 2.8 27.3 1.0
O1 A:747106 2.8 29.8 1.0
C2 A:DG25 2.9 27.5 1.0
O6 A:DG26 2.9 32.7 1.0
C6 A:DG26 3.0 37.9 1.0
N2 A:DG25 3.3 32.5 1.0
C6 A:DG25 3.3 27.6 1.0
N3 A:DG25 3.4 27.9 1.0
C5 A:DG26 3.4 40.5 1.0
N2 A:DG44 3.4 32.6 1.0
O6 A:DG18 3.5 31.5 1.0
C4 A:747106 3.6 39.2 1.0
C2 A:747106 3.7 33.6 1.0
N1 A:DG26 3.7 38.7 1.0
K A:K101 3.7 27.8 1.0
C4 A:DG25 3.7 28.0 1.0
C5 A:DG25 3.7 30.6 1.0
N7 A:DG26 3.8 38.7 1.0
O6 A:DG25 3.9 27.3 1.0
N7 A:DG18 4.1 37.1 1.0
C6 A:DG18 4.1 28.3 1.0
C3 A:747106 4.1 37.5 1.0
C4 A:DG26 4.3 42.8 1.0
C5 A:DG18 4.4 29.5 1.0
C2 A:DG26 4.5 40.1 1.0
C8 A:DG26 4.7 39.9 1.0
C2 A:DG44 4.7 32.0 1.0
N4 A:DC17 4.7 37.4 1.0
F1 A:747106 4.8 40.8 1.0
N9 A:DG25 4.8 28.4 1.0
N7 A:DG25 4.8 28.1 1.0
N3 A:DG26 4.8 44.6 1.0
C6 A:747106 5.0 48.5 1.0
N9 A:DG26 5.0 43.0 1.0

Reference:

L.F.M.Passalacqua, A.R.Ferre-D'amare. Structure of Lettuce C20T Bound to Dfho To Be Published.
Page generated: Wed Jul 16 04:32:44 2025

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