Atomistry » Fluorine » PDB 8fhx-8fnq » 8fkf
Atomistry »
  Fluorine »
    PDB 8fhx-8fnq »
      8fkf »

Fluorine in PDB 8fkf: Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR36706

Protein crystallography data

The structure of Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR36706, PDB code: 8fkf was solved by B.S.Mactavish, D.J.Kojetin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.15 / 1.82
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 61.765, 61.765, 161.084, 90, 90, 90
R / Rfree (%) 18.1 / 21.6

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR36706 (pdb code 8fkf). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR36706, PDB code: 8fkf:

Fluorine binding site 1 out of 1 in 8fkf

Go back to Fluorine Binding Sites List in 8fkf
Fluorine binding site 1 out of 1 in the Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR36706


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR36706 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:35.5
occ:1.00
F09 A:Y5X501 0.0 35.5 1.0
C08 A:Y5X501 1.4 30.1 1.0
C10 A:Y5X501 2.4 29.2 1.0
C07 A:Y5X501 2.4 36.3 1.0
N06 A:Y5X501 3.6 45.8 1.0
C04 A:Y5X501 3.6 30.0 1.0
CG A:HIS323 3.7 30.1 1.0
CB A:HIS323 3.7 22.7 1.0
CG1 A:VAL446 3.8 29.7 1.0
ND1 A:HIS323 3.9 29.6 1.0
CE2 A:TYR327 4.0 19.8 1.0
CA A:VAL446 4.0 20.8 1.0
CB A:HIS449 4.1 36.2 1.0
C05 A:Y5X501 4.1 41.9 1.0
OH A:TYR327 4.1 22.7 1.0
CG2 A:VAL446 4.2 25.5 1.0
O A:VAL446 4.2 24.4 1.0
CB A:VAL446 4.2 24.2 1.0
CG A:HIS449 4.3 38.0 1.0
CE2 A:TYR477 4.3 24.9 1.0
CD2 A:HIS323 4.3 29.3 1.0
CZ A:TYR327 4.5 20.0 1.0
CE1 A:HIS323 4.5 30.3 1.0
C A:VAL446 4.6 22.4 1.0
CD2 A:HIS449 4.6 38.8 1.0
NE2 A:HIS323 4.8 31.6 1.0
N03 A:Y5X501 4.8 33.8 1.0
OH A:TYR477 4.9 32.7 1.0
CA A:HIS323 4.9 21.6 1.0
CZ A:TYR477 4.9 32.8 1.0
ND1 A:HIS449 5.0 29.8 1.0
CD2 A:TYR327 5.0 18.1 1.0
CD2 A:TYR477 5.0 21.5 1.0

Reference:

B.S.Mactavish, D.J.Kojetin. Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and SR36706 To Be Published.
Page generated: Wed Jul 16 04:34:28 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy