Fluorine in PDB 8fnq: Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound

The structure of Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Magnesium	(Mg)	4 atoms

The binding sites of Fluorine atom in the Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound (pdb code 8fnq). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound, PDB code: 8fnq:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:F301 b:25.2 occ:1.00 FAG A:OZ1301 0.0 25.2 1.0 CAF A:OZ1301 1.3 21.5 1.0 CAE A:OZ1301 2.3 16.5 1.0 CAA A:OZ1301 2.3 25.1 1.0 N1 E:DG18 3.1 14.7 1.0 C6 E:DG18 3.1 18.9 1.0 NE2 A:GLN146 3.1 20.7 1.0 CG A:GLN146 3.2 15.3 1.0 CD A:GLN146 3.2 22.2 1.0 O6 E:DG18 3.4 29.7 1.0 CAD A:OZ1301 3.5 22.4 1.0 C5 E:DG18 3.6 17.1 1.0 CAB A:OZ1301 3.6 25.3 1.0 C2 E:DG18 3.6 15.4 1.0 O A:HOH426 3.6 23.5 1.0 N A:GLN146 3.9 17.0 1.0 C4 E:DG18 3.9 21.6 1.0 CA A:GLN146 4.0 15.2 1.0 CAC A:OZ1301 4.0 25.8 1.0 N3 F:DC20 4.0 26.7 1.0 N3 E:DG18 4.0 20.6 1.0 OE1 A:GLN146 4.1 23.5 1.0 N4 F:DC20 4.1 22.2 1.0 CB A:GLN146 4.2 15.9 1.0 N2 E:DG18 4.2 11.1 1.0 C4 F:DC20 4.3 17.7 1.0 N7 E:DG18 4.4 16.5 1.0 CB A:PRO145 4.4 21.6 1.0 C A:PRO145 4.4 17.4 1.0 FAH A:OZ1301 4.6 33.5 1.0 O A:HOH446 4.8 37.9 1.0 C2 F:DC20 4.8 24.8 1.0 O A:HOH440 4.8 27.2 1.0 O A:PRO145 4.9 28.0 1.0 N9 E:DG18 4.9 22.2 1.0 CG A:PRO145 5.0 19.2 1.0 CA A:PRO145 5.0 23.6 1.0

Fluorine binding site 2 out of 4 in the Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:F301 b:33.5 occ:1.00 FAH A:OZ1301 0.0 33.5 1.0 CAD A:OZ1301 1.3 22.4 1.0 CAE A:OZ1301 2.3 16.5 1.0 CAC A:OZ1301 2.3 25.8 1.0 OE1 A:GLU152 2.6 21.6 1.0 NAJ A:OZ1301 2.7 16.8 1.0 CAI A:OZ1301 2.7 25.3 1.0 CD A:GLU152 3.1 22.1 1.0 OAW A:OZ1301 3.1 29.8 1.0 C2' F:DC20 3.2 18.2 1.0 CG A:GLU152 3.2 23.7 1.0 CB A:GLU152 3.4 18.6 1.0 CAF A:OZ1301 3.6 21.5 1.0 CAB A:OZ1301 3.6 25.3 1.0 N1 F:DC20 3.7 23.4 1.0 CAK A:OZ1301 3.8 21.5 1.0 CB A:PRO145 3.8 21.6 1.0 C2 F:DC20 3.8 24.8 1.0 C1' F:DC20 3.9 24.9 1.0 OE2 A:GLU152 4.0 25.3 1.0 CAA A:OZ1301 4.1 25.1 1.0 CAV A:OZ1301 4.1 21.0 1.0 O2 F:DC20 4.1 26.4 1.0 C6 F:DC20 4.1 20.1 1.0 MG A:MG303 4.2 17.7 1.0 N3 F:DC20 4.4 26.7 1.0 CAM A:OZ1301 4.4 19.6 1.0 C3' F:DC20 4.5 24.8 1.0 CA A:GLU152 4.5 15.7 1.0 C5 F:DC20 4.6 17.9 1.0 FAG A:OZ1301 4.6 25.2 1.0 OAL A:OZ1301 4.6 27.0 1.0 C4 F:DC20 4.7 17.7 1.0 CG A:PRO145 4.7 19.2 1.0

Fluorine binding site 3 out of 4 in the Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound within 5.0Å range: probe atom residue distance (Å) B Occ G:F301 b:25.2 occ:1.00 FAG G:OZ1301 0.0 25.2 1.0 CAF G:OZ1301 1.3 21.5 1.0 CAE G:OZ1301 2.3 16.5 1.0 CAA G:OZ1301 2.3 25.1 1.0 C6 K:DG18 3.1 18.9 1.0 N1 K:DG18 3.1 14.7 1.0 NE2 G:GLN146 3.1 20.7 1.0 CG G:GLN146 3.2 15.3 1.0 CD G:GLN146 3.2 22.2 1.0 O6 K:DG18 3.4 29.7 1.0 CAD G:OZ1301 3.5 22.4 1.0 C5 K:DG18 3.6 17.1 1.0 CAB G:OZ1301 3.6 25.3 1.0 C2 K:DG18 3.6 15.4 1.0 O G:HOH427 3.6 23.5 1.0 N G:GLN146 3.9 17.0 1.0 C4 K:DG18 4.0 21.6 1.0 CA G:GLN146 4.0 15.2 1.0 CAC G:OZ1301 4.0 25.8 1.0 N3 L:DC20 4.0 26.7 1.0 N3 K:DG18 4.0 20.6 1.0 OE1 G:GLN146 4.1 23.5 1.0 N4 L:DC20 4.1 22.2 1.0 CB G:GLN146 4.2 15.9 1.0 N2 K:DG18 4.2 11.1 1.0 C4 L:DC20 4.3 17.7 1.0 N7 K:DG18 4.4 16.5 1.0 CB G:PRO145 4.4 21.6 1.0 C G:PRO145 4.4 17.4 1.0 FAH G:OZ1301 4.6 33.5 1.0 O G:HOH446 4.8 37.9 1.0 C2 L:DC20 4.8 24.8 1.0 O G:HOH440 4.8 27.2 1.0 O G:PRO145 4.9 28.0 1.0 N9 K:DG18 4.9 22.2 1.0 CG G:PRO145 5.0 19.2 1.0 CA G:PRO145 5.0 23.6 1.0

Fluorine binding site 4 out of 4 in the Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of E138K/G140A/Q148K Hiv-1 Intasome with 4D Bound within 5.0Å range: probe atom residue distance (Å) B Occ G:F301 b:33.5 occ:1.00 FAH G:OZ1301 0.0 33.5 1.0 CAD G:OZ1301 1.3 22.4 1.0 CAE G:OZ1301 2.3 16.5 1.0 CAC G:OZ1301 2.3 25.8 1.0 OE1 G:GLU152 2.6 21.6 1.0 NAJ G:OZ1301 2.7 16.8 1.0 CAI G:OZ1301 2.7 25.3 1.0 CD G:GLU152 3.1 22.1 1.0 OAW G:OZ1301 3.1 29.8 1.0 C2' L:DC20 3.2 18.2 1.0 CG G:GLU152 3.2 23.7 1.0 CB G:GLU152 3.4 18.6 1.0 CAF G:OZ1301 3.6 21.5 1.0 CAB G:OZ1301 3.6 25.3 1.0 N1 L:DC20 3.7 23.4 1.0 CAK G:OZ1301 3.8 21.5 1.0 CB G:PRO145 3.8 21.6 1.0 C2 L:DC20 3.8 24.8 1.0 C1' L:DC20 3.9 24.9 1.0 OE2 G:GLU152 4.0 25.3 1.0 CAA G:OZ1301 4.1 25.1 1.0 CAV G:OZ1301 4.1 21.0 1.0 O2 L:DC20 4.1 26.4 1.0 C6 L:DC20 4.1 20.1 1.0 MG G:MG303 4.2 17.7 1.0 N3 L:DC20 4.4 26.7 1.0 CAM G:OZ1301 4.4 19.6 1.0 C3' L:DC20 4.5 24.8 1.0 CA G:GLU152 4.5 15.7 1.0 C5 L:DC20 4.6 17.9 1.0 FAG G:OZ1301 4.6 25.2 1.0 OAL G:OZ1301 4.6 27.0 1.0 C4 L:DC20 4.7 17.7 1.0 CG G:PRO145 4.7 19.2 1.0

M.Li, D.Oliveira Passos, Z.Shan, S.J.Smith, Q.Sun, A.Biswas, I.Choudhuri, T.S.Strutzenberg, A.Haldane, N.Deng, Z.Li, X.Z.Zhao, L.Briganti, M.Kvaratskhelia, T.R.Burke Jr., R.M.Levy, S.H.Hughes, R.Craigie, D.Lyumkis. Mechanisms of Hiv-1 Integrase Resistance to Dolutegravir and Potent Inhibition of Drug-Resistant Variants. Sci Adv V. 9 G5953 2023.
ISSN: ESSN 2375-2548
PubMed: 37478179
DOI: 10.1126/SCIADV.ADG5953