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Fluorine in PDB 8gj3: E. Coli Clamp Loader on Primed Template Dna

Enzymatic activity of E. Coli Clamp Loader on Primed Template Dna

All present enzymatic activity of E. Coli Clamp Loader on Primed Template Dna:
2.7.7.7;

Other elements in 8gj3:

The structure of E. Coli Clamp Loader on Primed Template Dna also contains other interesting chemical elements:

Aluminium (Al) 3 atoms
Magnesium (Mg) 3 atoms
Zinc (Zn) 4 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the E. Coli Clamp Loader on Primed Template Dna (pdb code 8gj3). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the E. Coli Clamp Loader on Primed Template Dna, PDB code: 8gj3:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in 8gj3

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Fluorine binding site 1 out of 12 in the E. Coli Clamp Loader on Primed Template Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F703

b:98.3
occ:1.00
F1 B:ALF703 0.0 98.3 1.0
AL B:ALF703 1.8 89.9 1.0
MG B:MG702 2.1 89.6 1.0
HH22 C:ARG169 2.4 84.2 1.0
F4 B:ALF703 2.5 93.5 1.0
F3 B:ALF703 2.5 73.8 1.0
O2B B:ADP701 2.7 83.1 1.0
HH21 C:ARG169 2.8 85.3 1.0
HH22 B:ARG215 2.8 95.8 1.0
NH2 C:ARG169 2.8 84.0 1.0
O1B B:ADP701 3.0 96.2 1.0
PB B:ADP701 3.4 80.0 1.0
O2A B:ADP701 3.4 105.7 1.0
F2 B:ALF703 3.6 86.5 1.0
NH2 B:ARG215 3.6 108.9 1.0
HH21 B:ARG215 3.9 95.5 1.0
OE1 C:GLU144 4.0 102.0 1.0
CZ C:ARG169 4.1 87.8 1.0
OG1 B:THR52 4.1 88.7 1.0
HH12 B:ARG215 4.1 93.3 1.0
OE2 B:GLU127 4.2 124.3 1.0
PA B:ADP701 4.3 105.6 1.0
O3A B:ADP701 4.3 83.7 1.0
HH12 C:ARG169 4.4 86.6 1.0
OE2 C:GLU144 4.6 99.0 1.0
HZ1 B:LYS51 4.6 87.1 1.0
CZ B:ARG215 4.6 96.0 1.0
O3B B:ADP701 4.6 94.2 1.0
HB B:THR52 4.7 85.9 1.0
CD C:GLU144 4.7 100.1 1.0
NH1 C:ARG169 4.7 91.0 1.0
O1A B:ADP701 4.7 96.4 1.0
NH1 B:ARG215 4.7 88.7 1.0
H B:GLY48 4.8 89.9 1.0
HZ3 B:LYS51 4.9 87.3 1.0
HE C:ARG169 5.0 85.1 1.0
CB B:THR52 5.0 82.6 1.0

Fluorine binding site 2 out of 12 in 8gj3

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Fluorine binding site 2 out of 12 in the E. Coli Clamp Loader on Primed Template Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F703

b:86.5
occ:1.00
F2 B:ALF703 0.0 86.5 1.0
AL B:ALF703 1.8 89.9 1.0
HZ1 B:LYS51 1.8 87.1 1.0
HA B:ARG47 2.5 100.0 1.0
F4 B:ALF703 2.5 93.5 1.0
F3 B:ALF703 2.5 73.8 1.0
NZ B:LYS51 2.6 83.8 1.0
H B:GLY48 2.6 89.9 1.0
HZ3 B:LYS51 2.7 87.3 1.0
O2B B:ADP701 2.8 83.1 1.0
HZ2 B:LYS51 2.9 86.9 1.0
HG21 B:THR157 3.2 101.3 1.0
N B:GLY48 3.4 93.0 1.0
CA B:ARG47 3.4 91.2 1.0
PB B:ADP701 3.5 80.0 1.0
HG23 B:THR157 3.5 102.2 1.0
O3B B:ADP701 3.6 94.2 1.0
F1 B:ALF703 3.6 98.3 1.0
HB2 B:ARG47 3.6 100.2 1.0
HH21 B:ARG215 3.7 95.5 1.0
CG2 B:THR157 3.7 102.7 1.0
CE B:LYS51 3.7 79.0 1.0
HG22 B:THR157 3.8 101.9 1.0
HE2 B:LYS51 3.8 85.1 1.0
HH22 B:ARG215 3.9 95.8 1.0
C B:ARG47 3.9 97.4 1.0
HE3 B:LYS51 3.9 86.5 1.0
O1B B:ADP701 4.0 96.2 1.0
CB B:ARG47 4.0 95.1 1.0
HH22 C:ARG169 4.1 84.2 1.0
NH2 B:ARG215 4.1 108.9 1.0
O B:THR46 4.2 107.2 1.0
HB3 B:ARG47 4.4 100.8 1.0
N B:ARG47 4.4 92.7 1.0
HA2 B:GLY48 4.4 88.5 1.0
H B:VAL49 4.4 88.8 1.0
CA B:GLY48 4.5 86.0 1.0
HH12 C:ARG169 4.5 86.6 1.0
HG22 C:THR165 4.6 94.4 1.0
HG21 C:THR165 4.6 95.1 1.0
C B:THR46 4.7 102.8 1.0
MG B:MG702 4.8 89.6 1.0
HG3 B:LYS51 4.8 86.6 1.0
HB2 B:LYS51 4.9 87.7 1.0
NH2 C:ARG169 4.9 84.0 1.0
O3A B:ADP701 5.0 83.7 1.0

Fluorine binding site 3 out of 12 in 8gj3

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Fluorine binding site 3 out of 12 in the E. Coli Clamp Loader on Primed Template Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F703

b:73.8
occ:1.00
F3 B:ALF703 0.0 73.8 1.0
HH22 C:ARG169 1.8 84.2 1.0
AL B:ALF703 1.8 89.9 1.0
HH22 B:ARG215 2.1 95.8 1.0
HH21 B:ARG215 2.2 95.5 1.0
HH12 C:ARG169 2.3 86.6 1.0
NH2 B:ARG215 2.4 108.9 1.0
NH2 C:ARG169 2.5 84.0 1.0
F2 B:ALF703 2.5 86.5 1.0
F1 B:ALF703 2.5 98.3 1.0
O2B B:ADP701 2.8 83.1 1.0
NH1 C:ARG169 3.0 91.0 1.0
CZ C:ARG169 3.1 87.8 1.0
HH21 C:ARG169 3.2 85.3 1.0
H B:GLY48 3.3 89.9 1.0
F4 B:ALF703 3.6 93.5 1.0
CZ B:ARG215 3.6 96.0 1.0
HH11 C:ARG169 3.7 85.6 1.0
HB2 B:ARG47 3.8 100.2 1.0
HB C:THR165 3.8 94.4 1.0
N B:GLY48 4.0 93.0 1.0
HA B:ARG47 4.1 100.0 1.0
O2A B:ADP701 4.1 105.7 1.0
PB B:ADP701 4.1 80.0 1.0
HH12 B:ARG215 4.2 93.3 1.0
HZ1 B:LYS51 4.3 87.1 1.0
HD21 C:LEU140 4.3 89.2 1.0
HE B:ARG215 4.3 93.9 1.0
NH1 B:ARG215 4.4 88.7 1.0
NE C:ARG169 4.4 82.8 1.0
HA2 B:GLY48 4.4 88.5 1.0
HG22 C:THR165 4.4 94.4 1.0
NE B:ARG215 4.5 93.5 1.0
HG21 C:THR165 4.5 95.1 1.0
MG B:MG702 4.5 89.6 1.0
O1B B:ADP701 4.5 96.2 1.0
CB B:ARG47 4.6 95.1 1.0
CB C:THR165 4.7 91.9 1.0
CA B:ARG47 4.7 91.2 1.0
HD11 C:LEU140 4.7 88.9 1.0
CG2 C:THR165 4.7 98.0 1.0
CA B:GLY48 4.8 86.0 1.0
HE C:ARG169 4.8 85.1 1.0
OE2 B:GLU127 4.8 124.3 1.0
HG C:LEU140 4.9 89.9 1.0
C B:ARG47 4.9 97.4 1.0
HA C:THR165 4.9 93.8 1.0
HZ3 B:LYS51 4.9 87.3 1.0
O3B B:ADP701 5.0 94.2 1.0

Fluorine binding site 4 out of 12 in 8gj3

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Fluorine binding site 4 out of 12 in the E. Coli Clamp Loader on Primed Template Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F703

b:93.5
occ:1.00
F4 B:ALF703 0.0 93.5 1.0
AL B:ALF703 1.8 89.9 1.0
O1B B:ADP701 2.1 96.2 1.0
HZ1 B:LYS51 2.5 87.1 1.0
F2 B:ALF703 2.5 86.5 1.0
F1 B:ALF703 2.5 98.3 1.0
MG B:MG702 2.6 89.6 1.0
PB B:ADP701 2.6 80.0 1.0
HZ3 B:LYS51 2.7 87.3 1.0
HE2 B:LYS51 2.8 85.1 1.0
O2B B:ADP701 2.8 83.1 1.0
NZ B:LYS51 2.9 83.8 1.0
O3B B:ADP701 3.1 94.2 1.0
HB2 B:LYS51 3.2 87.7 1.0
CE B:LYS51 3.3 79.0 1.0
F3 B:ALF703 3.6 73.8 1.0
HZ2 B:LYS51 3.7 86.9 1.0
HE3 B:LYS51 3.8 86.5 1.0
H B:THR52 3.9 88.3 1.0
OG1 B:THR52 3.9 88.7 1.0
O3A B:ADP701 4.1 83.7 1.0
CB B:LYS51 4.1 87.8 1.0
HH22 B:ARG215 4.3 95.8 1.0
HG3 B:LYS51 4.3 86.6 1.0
H B:LYS51 4.3 85.3 1.0
H B:GLY48 4.3 89.9 1.0
HH22 C:ARG169 4.4 84.2 1.0
HG23 B:THR157 4.4 102.2 1.0
CD B:LYS51 4.5 86.3 1.0
N B:THR52 4.5 91.0 1.0
CG B:LYS51 4.6 88.8 1.0
OE2 B:GLU127 4.6 124.3 1.0
HB3 B:LYS51 4.6 86.2 1.0
O2A B:ADP701 4.7 105.7 1.0
HB1 B:ALA155 4.7 98.2 1.0
HB B:THR52 4.7 85.9 1.0
CB B:THR52 4.9 82.6 1.0
HH21 B:ARG215 4.9 95.5 1.0
HA B:ARG47 4.9 100.0 1.0
PA B:ADP701 4.9 105.6 1.0
NH2 B:ARG215 4.9 108.9 1.0
N B:LYS51 5.0 75.5 1.0
HG21 B:THR157 5.0 101.3 1.0
HD2 B:LYS51 5.0 86.8 1.0
HG22 B:THR157 5.0 101.9 1.0
CA B:LYS51 5.0 87.2 1.0
CG2 B:THR157 5.0 102.7 1.0

Fluorine binding site 5 out of 12 in 8gj3

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Fluorine binding site 5 out of 12 in the E. Coli Clamp Loader on Primed Template Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F703

b:84.9
occ:1.00
F1 C:ALF703 0.0 84.9 1.0
AL C:ALF703 1.8 82.1 1.0
MG C:MG702 2.1 92.4 1.0
F4 C:ALF703 2.5 101.8 1.0
F3 C:ALF703 2.5 81.2 1.0
HH21 D:ARG169 2.7 94.6 1.0
HH22 C:ARG215 2.7 85.6 1.0
O2B C:ADP701 2.7 87.3 1.0
HH22 D:ARG169 2.8 94.2 1.0
O1B C:ADP701 3.0 101.5 1.0
NH2 D:ARG169 3.0 102.5 1.0
O2A C:ADP701 3.3 101.5 1.0
NH2 C:ARG215 3.3 88.5 1.0
HH21 C:ARG215 3.4 85.1 1.0
PB C:ADP701 3.4 66.4 1.0
F2 C:ALF703 3.6 83.5 1.0
OE1 D:GLU144 4.0 108.4 1.0
OG1 C:THR52 4.1 90.4 1.0
CZ D:ARG169 4.3 96.4 1.0
PA C:ADP701 4.3 94.8 1.0
OE2 D:GLU144 4.3 114.9 1.0
O3A C:ADP701 4.4 71.4 1.0
OE2 C:GLU127 4.4 112.4 1.0
CD D:GLU144 4.4 112.0 1.0
CZ C:ARG215 4.6 76.2 1.0
HH12 C:ARG215 4.6 84.8 1.0
O3B C:ADP701 4.6 78.4 1.0
HE D:ARG169 4.8 93.2 1.0
HB C:THR52 4.8 83.3 1.0
HH12 D:ARG169 4.9 93.8 1.0
O1A C:ADP701 4.9 88.6 1.0
H C:GLY48 4.9 89.6 1.0
HZ3 C:LYS51 5.0 84.9 1.0
NE D:ARG169 5.0 91.9 1.0

Fluorine binding site 6 out of 12 in 8gj3

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Fluorine binding site 6 out of 12 in the E. Coli Clamp Loader on Primed Template Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F703

b:83.5
occ:1.00
F2 C:ALF703 0.0 83.5 1.0
AL C:ALF703 1.8 82.1 1.0
HZ3 C:LYS51 2.3 84.9 1.0
F3 C:ALF703 2.5 81.2 1.0
F4 C:ALF703 2.5 101.8 1.0
HA C:ARG47 2.6 86.5 1.0
HZ1 C:LYS51 2.7 87.1 1.0
O2B C:ADP701 2.8 87.3 1.0
NZ C:LYS51 2.8 84.9 1.0
HZ2 C:LYS51 3.0 87.2 1.0
H C:GLY48 3.3 89.6 1.0
PB C:ADP701 3.5 66.4 1.0
O3B C:ADP701 3.5 78.4 1.0
CA C:ARG47 3.5 79.6 1.0
HG1 C:THR157 3.6 100.0 1.0
F1 C:ALF703 3.6 84.9 1.0
OG1 C:THR157 3.7 96.1 1.0
O C:THR46 3.8 95.5 1.0
HB2 C:ARG47 3.9 85.8 1.0
N C:GLY48 3.9 89.9 1.0
HH22 D:ARG169 4.0 94.2 1.0
HH21 C:ARG215 4.0 85.1 1.0
O1B C:ADP701 4.1 101.5 1.0
HB3 C:ARG47 4.1 86.7 1.0
CB C:ARG47 4.1 76.9 1.0
CE C:LYS51 4.2 88.5 1.0
C C:ARG47 4.3 87.8 1.0
N C:ARG47 4.4 81.0 1.0
HG22 D:THR165 4.4 93.1 1.0
HE2 C:LYS51 4.4 88.2 1.0
C C:THR46 4.4 89.6 1.0
HD2 C:LYS51 4.5 85.6 1.0
NH2 C:ARG215 4.7 88.5 1.0
HH22 C:ARG215 4.7 85.6 1.0
H C:VAL49 4.7 91.7 1.0
NH2 D:ARG169 4.8 102.5 1.0
MG C:MG702 4.8 92.4 1.0
HE3 C:LYS51 4.8 87.1 1.0
HG3 C:LYS51 4.9 86.8 1.0
HG21 C:THR157 4.9 100.8 1.0
CD C:LYS51 4.9 81.0 1.0
HG21 D:THR165 4.9 92.1 1.0
O3A C:ADP701 4.9 71.4 1.0
HH12 D:ARG169 5.0 93.8 1.0
CB C:THR157 5.0 96.7 1.0
HG23 C:THR157 5.0 99.7 1.0

Fluorine binding site 7 out of 12 in 8gj3

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Fluorine binding site 7 out of 12 in the E. Coli Clamp Loader on Primed Template Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F703

b:81.2
occ:1.00
F3 C:ALF703 0.0 81.2 1.0
HH22 D:ARG169 1.8 94.2 1.0
AL C:ALF703 1.8 82.1 1.0
HH21 C:ARG215 2.3 85.1 1.0
NH2 D:ARG169 2.4 102.5 1.0
F2 C:ALF703 2.5 83.5 1.0
F1 C:ALF703 2.5 84.9 1.0
O2B C:ADP701 2.7 87.3 1.0
NH2 C:ARG215 2.8 88.5 1.0
HH21 D:ARG169 2.9 94.6 1.0
HH22 C:ARG215 2.9 85.6 1.0
HH12 D:ARG169 2.9 93.8 1.0
CZ D:ARG169 3.2 96.4 1.0
NH1 D:ARG169 3.3 97.1 1.0
H C:GLY48 3.6 89.6 1.0
F4 C:ALF703 3.6 101.8 1.0
HB2 C:ARG47 3.8 85.8 1.0
HA C:ARG47 3.9 86.5 1.0
CZ C:ARG215 4.0 76.2 1.0
HE C:ARG215 4.1 83.2 1.0
PB C:ADP701 4.1 66.4 1.0
HH11 D:ARG169 4.1 93.3 1.0
HB D:THR165 4.1 91.0 1.0
O2A C:ADP701 4.2 101.5 1.0
HG22 D:THR165 4.3 93.1 1.0
NE D:ARG169 4.3 91.9 1.0
N C:GLY48 4.4 89.9 1.0
NE C:ARG215 4.4 75.1 1.0
CB C:ARG47 4.5 76.9 1.0
MG C:MG702 4.5 92.4 1.0
O1B C:ADP701 4.6 101.5 1.0
HB3 C:ARG47 4.6 86.7 1.0
HE D:ARG169 4.6 93.2 1.0
CA C:ARG47 4.6 79.6 1.0
HZ3 C:LYS51 4.7 84.9 1.0
HG21 D:THR165 4.9 92.1 1.0
OE2 C:GLU127 4.9 112.4 1.0
CG2 D:THR165 4.9 93.2 1.0
CB D:THR165 4.9 84.9 1.0
HA D:THR165 4.9 92.3 1.0
O3B C:ADP701 4.9 78.4 1.0
NH1 C:ARG215 5.0 79.8 1.0
HG1 C:THR157 5.0 100.0 1.0
HH12 C:ARG215 5.0 84.8 1.0

Fluorine binding site 8 out of 12 in 8gj3

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Fluorine binding site 8 out of 12 in the E. Coli Clamp Loader on Primed Template Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F703

b:101.8
occ:1.00
F4 C:ALF703 0.0 101.8 1.0
AL C:ALF703 1.8 82.1 1.0
O1B C:ADP701 2.1 101.5 1.0
F1 C:ALF703 2.5 84.9 1.0
F2 C:ALF703 2.5 83.5 1.0
PB C:ADP701 2.6 66.4 1.0
MG C:MG702 2.6 92.4 1.0
HZ3 C:LYS51 2.7 84.9 1.0
O2B C:ADP701 2.8 87.3 1.0
O3B C:ADP701 3.1 78.4 1.0
HB2 C:LYS51 3.3 86.9 1.0
HZ2 C:LYS51 3.4 87.2 1.0
NZ C:LYS51 3.4 84.9 1.0
HD2 C:LYS51 3.5 85.6 1.0
F3 C:ALF703 3.6 81.2 1.0
OG1 C:THR52 4.0 90.4 1.0
H C:THR52 4.0 83.7 1.0
HZ1 C:LYS51 4.0 87.1 1.0
O3A C:ADP701 4.1 71.4 1.0
CB C:LYS51 4.2 85.2 1.0
HG3 C:LYS51 4.2 86.8 1.0
CD C:LYS51 4.2 81.0 1.0
CE C:LYS51 4.4 88.5 1.0
CG C:LYS51 4.4 84.2 1.0
H C:LYS51 4.5 86.3 1.0
HH22 D:ARG169 4.5 94.2 1.0
O2A C:ADP701 4.5 101.5 1.0
HH22 C:ARG215 4.6 85.6 1.0
HB1 C:ALA155 4.6 88.4 1.0
OE2 C:GLU127 4.6 112.4 1.0
HB3 C:LYS51 4.7 85.9 1.0
N C:THR52 4.7 74.8 1.0
HH21 C:ARG215 4.7 85.1 1.0
H C:GLY48 4.7 89.6 1.0
HE2 C:LYS51 4.8 88.2 1.0
HA C:ARG47 4.9 86.5 1.0
PA C:ADP701 4.9 94.8 1.0
OG1 C:THR157 4.9 96.1 1.0
HB C:THR52 5.0 83.3 1.0
HH21 D:ARG169 5.0 94.6 1.0

Fluorine binding site 9 out of 12 in 8gj3

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Fluorine binding site 9 out of 12 in the E. Coli Clamp Loader on Primed Template Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F703

b:92.7
occ:1.00
F1 D:ALF703 0.0 92.7 1.0
AL D:ALF703 1.8 86.5 1.0
MG D:MG702 2.0 80.8 1.0
F3 D:ALF703 2.5 99.2 1.0
F4 D:ALF703 2.5 94.6 1.0
O2B D:ADP701 2.8 101.4 1.0
O1B D:ADP701 2.9 111.0 1.0
PB D:ADP701 3.2 98.0 1.0
F2 D:ALF703 3.6 110.8 1.0
OE2 D:GLU127 3.7 108.6 1.0
HH22 E:ARG158 4.0 100.7 1.0
O3B D:ADP701 4.0 94.7 1.0
OG1 D:THR52 4.0 88.5 1.0
HH21 D:ARG215 4.2 100.0 1.0
HE2 D:LYS51 4.2 86.8 1.0
HZ3 D:LYS51 4.2 88.3 1.0
OD2 D:ASP126 4.3 112.3 1.0
OD1 D:ASP126 4.4 121.9 1.0
NH2 E:ARG158 4.4 103.1 1.0
HH21 E:ARG158 4.4 99.9 1.0
HZ1 D:LYS51 4.5 89.5 1.0
O2A D:ADP701 4.5 114.8 1.0
NZ D:LYS51 4.7 86.7 1.0
O3A D:ADP701 4.7 82.1 1.0
CG D:ASP126 4.8 117.0 1.0
NH2 D:ARG215 4.8 107.1 1.0
OE1 E:GLU133 4.8 121.2 1.0
CD D:GLU127 4.8 113.9 1.0
HG1 D:THR157 4.9 109.2 1.0
CE D:LYS51 4.9 77.9 1.0
HB2 D:LYS51 4.9 86.1 1.0
H D:THR52 4.9 86.3 1.0
HH22 D:ARG215 5.0 99.7 1.0

Fluorine binding site 10 out of 12 in 8gj3

Go back to Fluorine Binding Sites List in 8gj3
Fluorine binding site 10 out of 12 in the E. Coli Clamp Loader on Primed Template Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of E. Coli Clamp Loader on Primed Template Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F703

b:110.8
occ:1.00
F2 D:ALF703 0.0 110.8 1.0
AL D:ALF703 1.8 86.5 1.0
H D:GLY48 2.2 92.4 1.0
HB2 D:ARG47 2.5 105.6 1.0
F3 D:ALF703 2.5 99.2 1.0
F4 D:ALF703 2.5 94.6 1.0
HA D:ARG47 2.5 104.6 1.0
O2B D:ADP701 2.8 101.4 1.0
N D:GLY48 2.9 88.1 1.0
CA D:ARG47 3.1 98.9 1.0
CB D:ARG47 3.2 100.9 1.0
HE D:ARG215 3.2 97.6 1.0
O3B D:ADP701 3.3 94.7 1.0
C D:ARG47 3.5 100.0 1.0
PB D:ADP701 3.5 98.0 1.0
HZ3 D:LYS51 3.5 88.3 1.0
HB3 D:ARG47 3.5 104.7 1.0
F1 D:ALF703 3.6 92.7 1.0
HH12 E:ARG158 3.8 99.8 1.0
HA2 D:GLY48 3.8 89.3 1.0
NE D:ARG215 3.9 92.0 1.0
HH21 D:ARG215 3.9 100.0 1.0
CA D:GLY48 3.9 82.2 1.0
HH22 E:ARG158 4.0 100.7 1.0
HG22 E:THR154 4.2 96.7 1.0
HD2 D:ARG215 4.2 98.2 1.0
NZ D:LYS51 4.3 86.7 1.0
HZ1 D:LYS51 4.4 89.5 1.0
NH1 E:ARG158 4.4 107.6 1.0
HA3 D:GLY48 4.4 91.0 1.0
HG1 D:THR157 4.5 109.2 1.0
N D:ARG47 4.5 98.1 1.0
CG D:ARG47 4.5 99.4 1.0
NH2 D:ARG215 4.5 107.1 1.0
O1B D:ADP701 4.6 111.0 1.0
NH2 E:ARG158 4.6 103.1 1.0
CD D:ARG215 4.7 95.7 1.0
O D:ARG47 4.7 109.1 1.0
CZ D:ARG215 4.7 97.7 1.0
HG3 D:ARG47 4.7 104.5 1.0
O3A D:ADP701 4.7 82.1 1.0
HG2 D:ARG47 4.7 104.8 1.0
HZ2 D:LYS51 4.7 88.9 1.0
H D:VAL49 4.7 96.5 1.0
HB E:THR154 4.8 96.1 1.0
HH11 E:ARG158 4.9 100.6 1.0
O D:THR46 4.9 109.3 1.0
CZ E:ARG158 4.9 98.4 1.0
CG2 E:THR154 4.9 95.3 1.0
OG1 D:THR157 5.0 116.2 1.0
HG21 E:THR154 5.0 96.9 1.0
H D:ARG47 5.0 104.4 1.0

Reference:

Z.-Q.Xu, A.J.Oakley, N.E.Dixon. Structural Characterisation of the Complete Cycle of Sliding Clamp Loading in E. Coli To Be Published.
Page generated: Wed Jul 16 05:02:15 2025

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