Fluorine in PDB 8gkr: Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da

Enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da

All present enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da, PDB code: 8gkr was solved by H.Jung, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	48.95 / 2.78
*Space group*	P 6₁
*Cell size a, b, c (Å), α, β, γ (°)*	97.907, 97.907, 81.008, 90, 90, 120
*R / R_free (%)*	20 / 28.2

Other elements in 8gkr:

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da (pdb code 8gkr). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da, PDB code: 8gkr:

Fluorine binding site 1 out of 1 in 8gkr

Go back to

Fluorine Binding Sites List in 8gkr

Fluorine binding site 1 out of 1 in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Da within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F501 b:61.0 occ:1.00	F24	A:B7P501	0.0	61.0	1.0
	C23	A:B7P501	1.4	59.0	1.0
	C25	A:B7P501	2.5	55.7	1.0
	C22	A:B7P501	2.5	62.0	1.0
	O26	A:B7P501	2.7	52.2	1.0
	O11	A:B7P501	3.2	70.7	1.0
	C2'	P:DG8	3.5	57.3	1.0
	C8	P:DG8	3.5	45.1	1.0
	N9	P:DG8	3.5	48.6	1.0
	N27	A:B7P501	3.8	53.7	1.0
	N7	P:DG8	3.8	43.6	1.0
	N21	A:B7P501	3.8	64.4	1.0
	C3'	P:DG8	3.9	55.6	1.0
	C4	P:DG8	3.9	49.1	1.0
	C5	P:DG8	4.0	44.8	1.0
	C1'	P:DG8	4.0	54.1	1.0
	O08	A:B7P501	4.1	71.0	1.0
	CD	A:ARG61	4.2	64.4	1.0
	P09	A:B7P501	4.2	79.4	1.0
	C28	A:B7P501	4.3	59.3	1.0
	N3	P:DG8	4.6	52.3	1.0
	O4'	P:DG8	4.7	59.1	1.0
	NE	A:ARG61	4.7	76.8	1.0
	O5'	P:DG8	4.7	58.7	1.0
	O3'	P:DG8	4.8	59.8	1.0
	O4	T:DT3	4.8	71.2	1.0
	C4'	P:DG8	4.9	53.2	1.0
	C6	P:DG8	4.9	44.2	1.0

Reference:

H.Jung, H.Jung. N/A N/A.

Page generated: Wed Jul 16 05:06:04 2025

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