Fluorine in PDB 8gml: Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg

Enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg

All present enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg, PDB code: 8gml was solved by H.Jung, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	49.41 / 2.57
*Space group*	P 6₁
*Cell size a, b, c (Å), α, β, γ (°)*	98.822, 98.822, 81.184, 90, 90, 120
*R / R_free (%)*	20.1 / 26

Other elements in 8gml:

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg (pdb code 8gml). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg, PDB code: 8gml:

Fluorine binding site 1 out of 1 in 8gml

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Fluorine Binding Sites List in 8gml

Fluorine binding site 1 out of 1 in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Dg within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F501 b:71.4 occ:1.00	F24	A:B7P501	0.0	71.4	1.0
	C23	A:B7P501	1.4	72.8	1.0
	C25	A:B7P501	2.4	73.0	1.0
	C22	A:B7P501	2.5	74.0	1.0
	O26	A:B7P501	2.7	75.3	1.0
	C8	P:DG8	3.0	58.6	1.0
	C2'	P:DG8	3.1	61.3	1.0
	N9	P:DG8	3.1	61.3	1.0
	O10	A:B7P501	3.3	78.0	1.0
	N7	P:DG8	3.4	59.0	1.0
	C4	P:DG8	3.5	55.0	1.0
	C5	P:DG8	3.6	56.1	1.0
	C1'	P:DG8	3.7	60.4	1.0
	N27	A:B7P501	3.8	73.5	1.0
	N21	A:B7P501	3.9	72.7	1.0
	N3	P:DG8	4.3	55.3	1.0
	C28	A:B7P501	4.3	73.8	1.0
	NE	A:ARG61	4.4	66.9	1.0
	C3'	P:DG8	4.5	63.6	1.0
	P09	A:B7P501	4.5	89.0	1.0
	C6	P:DG8	4.6	57.7	1.0
	O4'	P:DG8	4.6	58.2	1.0
	O08	A:B7P501	4.7	78.4	1.0
	O5'	P:DG8	4.7	64.9	1.0
	NH2	A:ARG61	4.9	64.5	1.0

Reference:

H.Jung, H.Jung. N/A N/A.

Page generated: Wed Jul 16 05:06:38 2025

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