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Fluorine in PDB 8qdp: NMR2 Structure of Kras G12V (Gmppnp Bound) in Complex with N-[2-(5- Fluoro-1H-Indol-3-Yl)Ethyl]Acetamide

Fluorine Binding Sites:

The binding sites of Fluorine atom in the NMR2 Structure of Kras G12V (Gmppnp Bound) in Complex with N-[2-(5- Fluoro-1H-Indol-3-Yl)Ethyl]Acetamide (pdb code 8qdp). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the NMR2 Structure of Kras G12V (Gmppnp Bound) in Complex with N-[2-(5- Fluoro-1H-Indol-3-Yl)Ethyl]Acetamide, PDB code: 8qdp:

Fluorine binding site 1 out of 1 in 8qdp

Go back to Fluorine Binding Sites List in 8qdp
Fluorine binding site 1 out of 1 in the NMR2 Structure of Kras G12V (Gmppnp Bound) in Complex with N-[2-(5- Fluoro-1H-Indol-3-Yl)Ethyl]Acetamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of NMR2 Structure of Kras G12V (Gmppnp Bound) in Complex with N-[2-(5- Fluoro-1H-Indol-3-Yl)Ethyl]Acetamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F500

b:0.0
occ:1.00
F1 A:HWH500 0.0 0.0 1.0
C10 A:HWH500 1.3 0.0 1.0
C9 A:HWH500 2.4 0.0 1.0
C11 A:HWH500 2.4 0.0 1.0
H A:ARG73 2.4 0.0 1.0
H12 A:HWH500 2.6 0.0 1.0
H8 A:HWH500 2.6 0.0 1.0
HA A:MET72 3.0 0.0 1.0
O A:TYR71 3.0 0.0 1.0
H A:THR74 3.1 0.0 1.0
N A:GLY75 3.3 0.0 1.0
N A:ARG73 3.4 0.0 1.0
HA2 A:GLY75 3.4 0.0 1.0
N A:THR74 3.5 0.0 1.0
C A:THR74 3.5 0.0 1.0
HE2 A:MET72 3.5 0.0 1.0
H A:GLY75 3.5 0.0 1.0
HA3 A:GLY75 3.6 0.0 1.0
C8 A:HWH500 3.6 0.0 1.0
C12 A:HWH500 3.6 0.0 1.0
CA A:GLY75 3.7 0.0 1.0
HD23 A:LEU56 3.8 0.0 1.0
O A:THR74 3.9 0.0 1.0
CA A:MET72 3.9 0.0 1.0
HD1 A:TYR71 4.0 0.0 1.0
CA A:THR74 4.0 0.0 1.0
HD21 A:LEU56 4.1 0.0 1.0
C A:TYR71 4.1 0.0 1.0
C A:ARG73 4.1 0.0 1.0
H10 A:HWH500 4.1 0.0 1.0
C7 A:HWH500 4.1 0.0 1.0
HB A:VAL7 4.1 0.0 1.0
SD A:MET72 4.2 0.0 1.0
C A:MET72 4.2 0.0 1.0
CE A:MET72 4.3 0.0 1.0
CA A:ARG73 4.3 0.0 1.0
CD2 A:LEU56 4.4 0.0 1.0
OG1 A:THR74 4.4 0.0 1.0
HB3 A:ARG73 4.4 0.0 1.0
H7 A:HWH500 4.4 0.0 1.0
HB A:THR74 4.4 0.0 1.0
N A:MET72 4.5 0.0 1.0
CD1 A:TYR71 4.5 0.0 1.0
H9 A:HWH500 4.5 0.0 1.0
CB A:THR74 4.5 0.0 1.0
HE1 A:TYR71 4.6 0.0 1.0
HD22 A:LEU56 4.7 0.0 1.0
H6 A:HWH500 4.7 0.0 1.0
HE3 A:MET72 4.7 0.0 1.0
CE1 A:TYR71 4.8 0.0 1.0
HG22 A:VAL7 4.9 0.0 1.0
O A:ARG73 4.9 0.0 1.0
C5 A:HWH500 4.9 0.0 1.0
HA A:THR74 4.9 0.0 1.0
CB A:ARG73 4.9 0.0 1.0
HG11 A:VAL7 5.0 0.0 1.0

Reference:

M.Buetikofer, J.Orts. NMR2 Structure of Kras G12V (Gmppnp Bound) in Complex with 5-(1H-Indol-2-L)Piperazin-2-One To Be Published.
Page generated: Wed Jul 16 06:51:00 2025

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