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Fluorine in PDB 8ueb: Crystal Structure of Sars-Cov-2 3CL Protease with Inhibitor 30

Enzymatic activity of Crystal Structure of Sars-Cov-2 3CL Protease with Inhibitor 30

All present enzymatic activity of Crystal Structure of Sars-Cov-2 3CL Protease with Inhibitor 30:
3.4.22.69;

Protein crystallography data

The structure of Crystal Structure of Sars-Cov-2 3CL Protease with Inhibitor 30, PDB code: 8ueb was solved by F.Forouhar, H.Liu, A.Zack, S.Iketani, A.Williams, D.R.Vaz, D.L.Habashi, K.Choi, S.J.Resnick, A.Chavez, D.D.Ho, B.R.Stockwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.84 / 2.03
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 96.436, 82.113, 54.634, 90, 117.2, 90
R / Rfree (%) 16.3 / 19.9

Other elements in 8ueb:

The structure of Crystal Structure of Sars-Cov-2 3CL Protease with Inhibitor 30 also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Sars-Cov-2 3CL Protease with Inhibitor 30 (pdb code 8ueb). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Sars-Cov-2 3CL Protease with Inhibitor 30, PDB code: 8ueb:

Fluorine binding site 1 out of 1 in 8ueb

Go back to Fluorine Binding Sites List in 8ueb
Fluorine binding site 1 out of 1 in the Crystal Structure of Sars-Cov-2 3CL Protease with Inhibitor 30


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Sars-Cov-2 3CL Protease with Inhibitor 30 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:48.5
occ:1.00
F1 A:WE8401 0.0 48.5 1.0
C17 A:WE8401 1.4 53.2 1.0
C18 A:WE8401 2.4 44.0 1.0
C16 A:WE8401 2.4 54.2 1.0
C A:THR190 3.4 48.1 1.0
N A:ALA191 3.5 43.4 1.0
CA A:THR190 3.5 50.7 1.0
C19 A:WE8401 3.6 42.6 1.0
C15 A:WE8401 3.6 55.0 1.0
N A:THR190 3.7 50.8 1.0
C A:GLN189 3.7 50.5 1.0
O A:GLN189 3.7 50.7 1.0
CG A:GLN189 3.8 48.8 1.0
O A:THR190 3.9 41.1 1.0
C14 A:WE8401 4.1 47.5 1.0
CA A:ALA191 4.2 46.5 1.0
CA A:GLN189 4.4 47.0 1.0
CB A:GLN189 4.7 48.6 1.0
CB A:ALA191 4.7 48.3 1.0
NE2 A:GLN189 4.8 59.8 1.0
CD A:GLN189 4.8 51.2 1.0
CL1 A:WE8401 4.9 43.2 1.0

Reference:

H.Liu, A.Zack, F.Forouhar, S.Iketani, A.Williams, D.R.Vaz, D.L.Habashi, K.Choi, S.J.Resnick, A.Chavez, D.D.Ho, B.R.Stockwell. Development of Small Molecule Non-Covalent Coronavirus 3CL Protease Inhibitors From Dna-Encoded Chemical Library Screening To Be Published.
Page generated: Sat Feb 8 18:16:01 2025

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