Fluorine in PDB 8vrb: Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate

The binding sites of Fluorine atom in the Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate (pdb code 8vrb). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate, PDB code: 8vrb:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate within 5.0Å range: probe atom residue distance (Å) B Occ E:F301 b:20.0 occ:1.00 F1 E:MOV301 0.0 20.0 1.0 C4 E:MOV301 1.3 20.0 1.0 C5 E:MOV301 2.3 20.0 1.0 C3 E:MOV301 2.4 20.0 1.0 O E:GLY100 2.4 46.2 1.0 O3 E:MOV301 2.7 20.0 1.0 C6 E:MOV301 2.9 20.0 1.0 C26 E:MOV301 3.0 20.0 1.0 C E:GLY100 3.1 46.2 1.0 CA E:TRP101 3.3 47.9 1.0 C E:TRP101 3.4 47.9 1.0 N E:ALA103 3.4 43.1 1.0 N E:TRP101 3.5 47.9 1.0 C1 E:MOV301 3.6 20.0 1.0 N1 E:MOV301 3.6 20.0 1.0 O E:TRP101 3.7 47.9 1.0 CA E:ALA103 3.8 43.1 1.0 N E:ILE102 3.9 44.4 1.0 C2 E:MOV301 4.0 20.0 1.0 C30 E:MOV301 4.1 20.0 1.0 C27 E:MOV301 4.2 20.0 1.0 CA E:GLY100 4.3 46.2 1.0 N E:GLY100 4.3 46.2 1.0 C E:ILE102 4.5 44.4 1.0 F2 E:MOV301 4.6 20.0 1.0 C21 E:MOV301 4.7 20.0 1.0 CB E:ALA103 4.7 43.1 1.0 C E:GLY99 4.8 47.7 1.0 CB E:TRP101 4.8 47.9 1.0 CA E:ILE102 4.8 44.4 1.0 C7 E:MOV301 4.8 20.0 1.0 N E:ALA104 4.9 41.1 1.0 C E:ALA103 4.9 43.1 1.0

Fluorine binding site 2 out of 2 in the Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of A Synthetic Antibody in Complex with A Class I Mhc Presenting A Hapten-Peptide Conjugate within 5.0Å range: probe atom residue distance (Å) B Occ E:F301 b:20.0 occ:1.00 F2 E:MOV301 0.0 20.0 1.0 C30 E:MOV301 1.4 20.0 1.0 C29 E:MOV301 2.3 20.0 1.0 C6 E:MOV301 2.4 20.0 1.0 N1 E:MOV301 2.8 20.0 1.0 C3 E:MOV301 2.8 20.0 1.0 CB D:ALA91 2.9 42.7 1.0 C22 E:MOV301 3.4 20.0 1.0 C28 E:MOV301 3.6 20.0 1.0 C26 E:MOV301 3.6 20.0 1.0 C13 E:MOV301 3.7 20.0 1.0 CB E:ALA103 3.9 43.1 1.0 C2 E:MOV301 3.9 20.0 1.0 CA E:ALA103 3.9 43.1 1.0 C4 E:MOV301 4.0 20.0 1.0 C27 E:MOV301 4.1 20.0 1.0 C12 E:MOV301 4.2 20.0 1.0 CG1 D:ILE98 4.2 39.2 1.0 C9 E:MOV301 4.3 20.0 1.0 CA D:ALA91 4.4 42.7 1.0 CD1 D:ILE98 4.4 39.2 1.0 OH D:TYR93 4.5 43.9 1.0 N4 E:MOV301 4.5 20.0 1.0 CZ D:TYR93 4.6 43.9 1.0 C E:ALA103 4.6 43.1 1.0 F1 E:MOV301 4.6 20.0 1.0 O3 E:MOV301 4.8 20.0 1.0 C1 E:MOV301 4.8 20.0 1.0 C5 E:MOV301 4.9 20.0 1.0 O E:ALA103 4.9 43.1 1.0 CE2 D:TYR93 4.9 43.9 1.0 CE1 D:TYR93 5.0 43.9 1.0

L.Maso, E.Rajak, I.Bang, A.Koide, T.Hattori, B.G.Neel, S.Koide. Molecular Basis For Antibody Recognition of Multiple Drug-Peptide/Mhc Complexes. Proc.Natl.Acad.Sci.Usa V. 121 29121 2024.
ISSN: ESSN 1091-6490
PubMed: 38781214
DOI: 10.1073/PNAS.2319029121