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Fluorine in PDB 8w08: Crystal Structure of the Worst Case Reconstruction of the Ancestral Triosephosphate Isomerase of the Last Opisthokont Common Ancestor Obtained By Maximum Likelihood

Enzymatic activity of Crystal Structure of the Worst Case Reconstruction of the Ancestral Triosephosphate Isomerase of the Last Opisthokont Common Ancestor Obtained By Maximum Likelihood

All present enzymatic activity of Crystal Structure of the Worst Case Reconstruction of the Ancestral Triosephosphate Isomerase of the Last Opisthokont Common Ancestor Obtained By Maximum Likelihood:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure of the Worst Case Reconstruction of the Ancestral Triosephosphate Isomerase of the Last Opisthokont Common Ancestor Obtained By Maximum Likelihood, PDB code: 8w08 was solved by J.A.Perez-Nino, A.Rodriguez-Romero, Y.Guerra-Borrego, D.A.Fernandez-Velasco, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.52 / 1.88
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.461, 106.831, 114.792, 90, 90, 90
R / Rfree (%) 19.3 / 22.5

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the Worst Case Reconstruction of the Ancestral Triosephosphate Isomerase of the Last Opisthokont Common Ancestor Obtained By Maximum Likelihood (pdb code 8w08). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of the Worst Case Reconstruction of the Ancestral Triosephosphate Isomerase of the Last Opisthokont Common Ancestor Obtained By Maximum Likelihood, PDB code: 8w08:

Fluorine binding site 1 out of 1 in 8w08

Go back to Fluorine Binding Sites List in 8w08
Fluorine binding site 1 out of 1 in the Crystal Structure of the Worst Case Reconstruction of the Ancestral Triosephosphate Isomerase of the Last Opisthokont Common Ancestor Obtained By Maximum Likelihood


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Worst Case Reconstruction of the Ancestral Triosephosphate Isomerase of the Last Opisthokont Common Ancestor Obtained By Maximum Likelihood within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:22.4
occ:1.00
 NE2 A:HIS94 3.1 24.6 1.0
ND2 A:ASN10 3.5 22.0 1.0
CE A:LYS12 3.7 26.6 1.0
CB A:ASN10 3.8 24.5 1.0
CD2 A:HIS94 3.9 24.0 1.0
CG A:LEU231 3.9 27.5 1.0
CD2 A:LEU231 3.9 24.7 1.0
CG A:ASN10 4.1 23.8 1.0
CA A:GLY233 4.1 30.2 1.0
CE1 A:HIS94 4.2 24.6 1.0
N A:GLY233 4.2 29.7 1.0
O A:LEU231 4.2 34.1 1.0
NZ A:LYS12 4.3 24.8 1.0
O A:VAL232 4.3 31.7 1.0
C A:VAL232 4.4 32.3 1.0
C A:LEU231 4.7 32.4 1.0
CB A:LEU231 4.8 28.5 1.0
CD1 A:LEU231 4.8 24.2 1.0
O A:GLY210 4.9 32.8 1.0
OE1 A:GLU166 4.9 30.9 1.0

Reference:

J.A.Perez-Nino, Y.Guerra, A.J.Diaz-Salazar, M.Costas, A.Rodriguez-Romero, D.A.Fernandez-Velasco. Stable Monomers in the Ancestral Sequence Reconstruction of the Last Opisthokont Common Ancestor of Dimeric Triosephosphate Isomerase. Protein Sci. V. 33 E5134 2024.
ISSN: ESSN 1469-896X
PubMed: 39145435
DOI: 10.1002/PRO.5134
Page generated: Wed Jul 16 09:49:59 2025

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