Fluorine in PDB 8wh9: Structure of DDM1-Nucleosome Complex in Adp-Befx State

All present enzymatic activity of Structure of DDM1-Nucleosome Complex in Adp-Befx State:
3.6.4.12;

The binding sites of Fluorine atom in the Structure of DDM1-Nucleosome Complex in Adp-Befx State (pdb code 8wh9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of DDM1-Nucleosome Complex in Adp-Befx State, PDB code: 8wh9:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of DDM1-Nucleosome Complex in Adp-Befx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of DDM1-Nucleosome Complex in Adp-Befx State within 5.0Å range: probe atom residue distance (Å) B Occ K:F801 b:173.0 occ:1.00 F1 K:BEF801 0.0 173.0 1.0 BE K:BEF801 1.6 173.0 1.0 F3 K:BEF801 2.5 173.0 1.0 F2 K:BEF801 2.6 173.0 1.0 O3B K:ADP802 3.1 177.4 1.0 O2B K:ADP802 3.8 177.4 1.0 CD K:LYS233 3.8 176.0 1.0 PB K:ADP802 3.9 177.4 1.0 NZ K:LYS233 4.0 176.0 1.0 NH2 K:ARG633 4.2 168.8 1.0 O1B K:ADP802 4.4 177.4 1.0 CE K:LYS233 4.5 176.0 1.0 NH1 K:ARG636 4.6 176.5 1.0

Fluorine binding site 2 out of 3 in the Structure of DDM1-Nucleosome Complex in Adp-Befx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of DDM1-Nucleosome Complex in Adp-Befx State within 5.0Å range: probe atom residue distance (Å) B Occ K:F801 b:173.0 occ:1.00 F2 K:BEF801 0.0 173.0 1.0 BE K:BEF801 1.5 173.0 1.0 NH1 K:ARG636 2.5 176.5 1.0 F3 K:BEF801 2.5 173.0 1.0 F1 K:BEF801 2.6 173.0 1.0 CZ K:ARG636 2.8 176.5 1.0 O3B K:ADP802 3.0 177.4 1.0 NH2 K:ARG636 3.1 176.5 1.0 NH2 K:ARG633 3.4 168.8 1.0 O2B K:ADP802 3.7 177.4 1.0 NE K:ARG636 3.7 176.5 1.0 CA K:GLY606 3.8 163.7 1.0 PB K:ADP802 3.9 177.4 1.0 C K:GLY606 4.1 163.7 1.0 CZ K:ARG633 4.2 168.8 1.0 N K:GLY606 4.3 163.7 1.0 CD K:ARG636 4.4 176.5 1.0 O K:GLY606 4.5 163.7 1.0 NE K:ARG633 4.6 168.8 1.0 N K:ILE607 4.6 168.3 1.0 O3A K:ADP802 4.8 177.4 1.0

Fluorine binding site 3 out of 3 in the Structure of DDM1-Nucleosome Complex in Adp-Befx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of DDM1-Nucleosome Complex in Adp-Befx State within 5.0Å range: probe atom residue distance (Å) B Occ K:F801 b:173.0 occ:1.00 F3 K:BEF801 0.0 173.0 1.0 BE K:BEF801 1.5 173.0 1.0 F1 K:BEF801 2.5 173.0 1.0 F2 K:BEF801 2.5 173.0 1.0 O2B K:ADP802 2.6 177.4 1.0 O3B K:ADP802 3.7 177.4 1.0 PB K:ADP802 3.7 177.4 1.0 CG2 K:THR234 3.8 174.4 1.0 NH1 K:ARG636 3.9 176.5 1.0 O1B K:ADP802 4.6 177.4 1.0 OG1 K:THR234 4.7 174.4 1.0 CA K:GLY606 4.8 163.7 1.0 NE1 K:TRP265 4.8 166.4 1.0 CZ K:ARG636 4.9 176.5 1.0 O3A K:ADP802 4.9 177.4 1.0 CB K:THR234 4.9 174.4 1.0

Y.Liu, Z.Zhang, H.Hu, W.Chen, F.Zhang, Q.Wang, C.Wang, K.Yan, J.Du. Molecular Basis of Chromatin Remodelling By DDM1 Involved in Plant Dna Methylation. Nat.Plants V. 10 374 2024.
ISSN: ESSN 2055-0278
PubMed: 38413824
DOI: 10.1038/S41477-024-01640-Z