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Fluorine in PDB 8y9y: Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C)

Enzymatic activity of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C)

All present enzymatic activity of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C):
7.4.2.8;

Other elements in 8y9y:

The structure of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C) (pdb code 8y9y). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C), PDB code: 8y9y:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 8y9y

Go back to Fluorine Binding Sites List in 8y9y
Fluorine binding site 1 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1002

b:12.3
occ:1.00
F1 A:BEF1002 0.0 12.3 1.0
O2B A:ADP1003 1.7 19.3 1.0
BE A:BEF1002 1.8 12.3 1.0
O1B A:ADP1003 2.3 19.3 1.0
PB A:ADP1003 2.5 19.3 1.0
MG A:MG1001 2.8 12.3 1.0
F3 A:BEF1002 3.0 12.3 1.0
F2 A:BEF1002 3.0 12.3 1.0
O3A A:ADP1003 3.1 19.3 1.0
NH2 A:ARG528 3.6 15.0 1.0
O2A A:ADP1003 3.8 19.3 1.0
O3B A:ADP1003 3.9 19.3 1.0
CE A:LYS106 4.0 11.3 1.0
PA A:ADP1003 4.1 19.3 1.0
OE2 A:GLU208 4.3 17.2 1.0
NZ A:LYS106 4.3 11.3 1.0
NH1 A:ARG525 4.4 6.8 1.0
N A:GLY103 4.4 15.3 1.0
CZ A:ARG528 4.6 15.0 1.0
NH1 A:ARG528 4.8 15.0 1.0
CB A:LYS106 4.9 11.3 1.0
O A:GLY490 4.9 5.1 1.0

Fluorine binding site 2 out of 3 in 8y9y

Go back to Fluorine Binding Sites List in 8y9y
Fluorine binding site 2 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1002

b:12.3
occ:1.00
F2 A:BEF1002 0.0 12.3 1.0
BE A:BEF1002 1.8 12.3 1.0
MG A:MG1001 1.9 12.3 1.0
O2B A:ADP1003 2.6 19.3 1.0
F3 A:BEF1002 3.0 12.3 1.0
F1 A:BEF1002 3.0 12.3 1.0
OE2 A:GLU208 3.5 17.2 1.0
PB A:ADP1003 3.9 19.3 1.0
OD1 A:ASP207 4.0 31.8 1.0
CG A:ASP207 4.1 31.8 1.0
CB A:LYS106 4.1 11.3 1.0
OG1 A:THR107 4.3 10.0 1.0
OD2 A:ASP207 4.3 31.8 1.0
O A:LYS106 4.3 11.3 1.0
CD A:GLU208 4.4 17.2 1.0
O3B A:ADP1003 4.4 19.3 1.0
CE A:LYS106 4.5 11.3 1.0
O1B A:ADP1003 4.5 19.3 1.0
C A:LYS106 4.6 11.3 1.0
O2A A:ADP1003 4.7 19.3 1.0
CB A:ASP207 4.7 31.8 1.0
NZ A:LYS106 4.8 11.3 1.0
CA A:LYS106 4.9 11.3 1.0
O3A A:ADP1003 4.9 19.3 1.0
CG A:GLU208 5.0 17.2 1.0

Fluorine binding site 3 out of 3 in 8y9y

Go back to Fluorine Binding Sites List in 8y9y
Fluorine binding site 3 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1002

b:12.3
occ:1.00
F3 A:BEF1002 0.0 12.3 1.0
BE A:BEF1002 1.8 12.3 1.0
MG A:MG1001 2.0 12.3 1.0
O2A A:ADP1003 2.6 19.3 1.0
O2B A:ADP1003 2.7 19.3 1.0
F2 A:BEF1002 3.0 12.3 1.0
NH2 A:ARG136 3.0 8.7 1.0
F1 A:BEF1002 3.0 12.3 1.0
O A:GLY490 3.2 5.1 1.0
PA A:ADP1003 3.9 19.3 1.0
PB A:ADP1003 4.1 19.3 1.0
C A:GLY490 4.1 5.1 1.0
O3A A:ADP1003 4.1 19.3 1.0
CZ A:ARG136 4.1 8.7 1.0
OG1 A:THR107 4.1 10.0 1.0
CA A:GLY490 4.3 5.1 1.0
NH1 A:ARG136 4.6 8.7 1.0
O1A A:ADP1003 4.7 19.3 1.0
OE2 A:GLU208 4.9 17.2 1.0
O1B A:ADP1003 4.9 19.3 1.0
CD2 A:LEU133 4.9 5.0 1.0

Reference:

X.Ou, C.Ma, D.Sun, J.Xu, Y.Wang, X.Wu, D.Wang, S.Yang, N.Gao, C.Song, L.Li. Secy Translocon Chaperones Protein Folding During Membrane Protein Insertion Cell 2025.
Page generated: Wed Jul 16 10:14:54 2025

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