Fluorine in PDB 8y9z: Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM

All present enzymatic activity of Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM:
7.4.2.8;

The structure of Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM (pdb code 8y9z). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM, PDB code: 8y9z:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:41.9 occ:1.00 F1 A:BEF1002 0.0 41.9 1.0 BE A:BEF1002 1.8 35.5 1.0 O1B A:ADP1003 2.3 47.0 1.0 F2 A:BEF1002 3.0 22.1 1.0 F3 A:BEF1002 3.0 30.7 1.0 PB A:ADP1003 3.2 37.1 1.0 O2B A:ADP1003 3.3 39.0 1.0 NH2 A:ARG525 3.5 32.0 1.0 O3A A:ADP1003 3.6 37.6 1.0 OE2 A:GLU208 3.8 41.3 1.0 MG A:MG1001 3.9 23.4 1.0 NH1 A:ARG528 4.0 34.6 1.0 CA A:GLY490 4.1 29.1 1.0 NZ A:LYS106 4.2 34.2 1.0 CE A:LYS106 4.2 27.4 1.0 O A:GLY490 4.3 32.7 1.0 NH2 A:ARG528 4.3 47.8 1.0 C A:GLY490 4.5 26.1 1.0 O3B A:ADP1003 4.6 46.3 1.0 CZ A:ARG525 4.7 34.8 1.0 CZ A:ARG528 4.7 38.1 1.0 O A:ARG489 4.7 44.0 1.0 OE1 A:GLN521 4.9 45.2 1.0 CD A:GLU208 4.9 46.5 1.0 CG2 A:THR102 5.0 40.7 1.0

Fluorine binding site 2 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:22.1 occ:1.00 F2 A:BEF1002 0.0 22.1 1.0 BE A:BEF1002 1.8 35.5 1.0 MG A:MG1001 2.0 23.4 1.0 OE2 A:GLU208 2.4 41.3 1.0 F1 A:BEF1002 3.0 41.9 1.0 F3 A:BEF1002 3.0 30.7 1.0 CD A:GLU208 3.4 46.5 1.0 OD1 A:ASP207 3.6 27.7 1.0 OD2 A:ASP207 3.7 31.6 1.0 O2B A:ADP1003 3.7 39.0 1.0 CG A:GLU208 3.8 37.2 1.0 CG A:ASP207 4.0 32.0 1.0 CE A:LYS106 4.2 27.4 1.0 NZ A:LYS106 4.3 34.2 1.0 OE1 A:GLU208 4.6 45.4 1.0 O1B A:ADP1003 4.6 47.0 1.0 PB A:ADP1003 4.7 37.1 1.0 CA A:GLY490 4.8 29.1 1.0

Fluorine binding site 3 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Seca-Secy Complex with the Substrate Hmbri-3TM within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:30.7 occ:1.00 F3 A:BEF1002 0.0 30.7 1.0 BE A:BEF1002 1.8 35.5 1.0 MG A:MG1001 2.0 23.4 1.0 O2B A:ADP1003 2.6 39.0 1.0 O3A A:ADP1003 2.8 37.6 1.0 O2A A:ADP1003 3.0 48.6 1.0 F2 A:BEF1002 3.0 22.1 1.0 F1 A:BEF1002 3.0 41.9 1.0 PB A:ADP1003 3.2 37.1 1.0 PA A:ADP1003 3.3 43.9 1.0 O1B A:ADP1003 3.7 47.0 1.0 OG1 A:THR107 3.7 40.3 1.0 O1A A:ADP1003 3.9 36.5 1.0 O A:GLY490 3.9 32.7 1.0 NH2 A:ARG136 4.3 32.2 1.0 O3B A:ADP1003 4.6 46.3 1.0 O5' A:ADP1003 4.8 44.7 1.0 C A:GLY490 4.9 26.1 1.0

X.Ou, C.Ma, D.Sun, J.Xu, Y.Wang, X.Wu, D.Wang, S.Yang, N.Gao, C.Song, L.Li. Secy Translocon Chaperones Protein Folding During Membrane Protein Insertion Cell 2025.