Fluorine in PDB 8ya2: Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C)

All present enzymatic activity of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C):
7.4.2.8;

The structure of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C) also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C) (pdb code 8ya2). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C), PDB code: 8ya2:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:125.8 occ:1.00 F1 A:BEF1002 0.0 125.8 1.0 O3B A:ADP1003 1.7 128.4 1.0 BE A:BEF1002 1.8 125.8 1.0 O3A A:ADP1003 2.2 128.4 1.0 PB A:ADP1003 2.5 128.4 1.0 NH2 A:ARG528 2.6 123.4 1.0 F2 A:BEF1002 3.0 125.8 1.0 F3 A:BEF1002 3.0 125.8 1.0 NH1 A:ARG528 3.2 123.4 1.0 CZ A:ARG528 3.3 123.4 1.0 NH2 A:ARG525 3.4 112.6 1.0 O2B A:ADP1003 3.5 128.4 1.0 N A:GLY103 3.5 124.3 1.0 O1B A:ADP1003 3.6 128.4 1.0 PA A:ADP1003 3.8 128.4 1.0 CA A:GLY103 3.8 124.3 1.0 MG A:MG1001 3.9 123.2 1.0 O2A A:ADP1003 4.2 128.4 1.0 O5' A:ADP1003 4.3 128.4 1.0 NE A:ARG528 4.5 123.4 1.0 CZ A:ARG525 4.7 112.6 1.0 C A:THR102 4.7 118.6 1.0 C5' A:ADP1003 4.7 128.4 1.0 O1A A:ADP1003 4.7 128.4 1.0 NZ A:LYS106 4.7 116.2 1.0 C A:GLY103 4.9 124.3 1.0

Fluorine binding site 2 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:125.8 occ:1.00 F2 A:BEF1002 0.0 125.8 1.0 BE A:BEF1002 1.8 125.8 1.0 O3B A:ADP1003 1.8 128.4 1.0 MG A:MG1001 2.0 123.2 1.0 NZ A:LYS106 2.4 116.2 1.0 O2B A:ADP1003 2.5 128.4 1.0 PB A:ADP1003 2.5 128.4 1.0 F3 A:BEF1002 3.0 125.8 1.0 F1 A:BEF1002 3.0 125.8 1.0 CE A:LYS106 3.2 116.2 1.0 O3A A:ADP1003 3.7 128.4 1.0 O1B A:ADP1003 3.7 128.4 1.0 OE2 A:GLU208 4.0 105.7 1.0 CD A:LYS106 4.6 116.2 1.0 N A:GLY103 4.6 124.3 1.0 NH2 A:ARG525 4.6 112.6 1.0 CB A:LYS106 4.7 116.2 1.0 CG A:LYS106 4.8 116.2 1.0 NE2 A:GLN521 4.9 109.3 1.0 PA A:ADP1003 4.9 128.4 1.0 CD A:GLU208 4.9 105.7 1.0 CA A:THR102 5.0 118.6 1.0

Fluorine binding site 3 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+20C) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:125.8 occ:1.00 F3 A:BEF1002 0.0 125.8 1.0 BE A:BEF1002 1.8 125.8 1.0 MG A:MG1001 2.0 123.2 1.0 O2B A:ADP1003 2.3 128.4 1.0 O3A A:ADP1003 2.6 128.4 1.0 O2A A:ADP1003 2.6 128.4 1.0 PB A:ADP1003 2.9 128.4 1.0 F2 A:BEF1002 3.0 125.8 1.0 F1 A:BEF1002 3.0 125.8 1.0 O3B A:ADP1003 3.1 128.4 1.0 PA A:ADP1003 3.2 128.4 1.0 O1A A:ADP1003 4.0 128.4 1.0 O A:GLY490 4.2 115.5 1.0 O1B A:ADP1003 4.3 128.4 1.0 O5' A:ADP1003 4.5 128.4 1.0 NH2 A:ARG136 4.6 108.8 1.0 CA A:GLY490 4.7 115.5 1.0 CG2 A:THR107 4.7 116.6 1.0 C A:GLY490 4.8 115.5 1.0 CD1 A:LEU133 5.0 104.4 1.0

X.Ou, C.Ma, D.Sun, J.Xu, Y.Wang, X.Wu, D.Wang, S.Yang, N.Gao, C.Song, L.Li. Secy Translocon Chaperones Protein Folding During Membrane Protein Insertion Cell 2025.