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Fluorine in PDB 8yya: Crystal Structure of Concanavalin A Complexed with 5-Fluorouracil

Protein crystallography data

The structure of Crystal Structure of Concanavalin A Complexed with 5-Fluorouracil, PDB code: 8yya was solved by S.Rasheed, R.Arif, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.74 / 2.96
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.781, 86.546, 88.637, 90, 90, 90
R / Rfree (%) 19.5 / 27.4

Other elements in 8yya:

The structure of Crystal Structure of Concanavalin A Complexed with 5-Fluorouracil also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Calcium (Ca) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Concanavalin A Complexed with 5-Fluorouracil (pdb code 8yya). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Concanavalin A Complexed with 5-Fluorouracil, PDB code: 8yya:

Fluorine binding site 1 out of 1 in 8yya

Go back to Fluorine Binding Sites List in 8yya
Fluorine binding site 1 out of 1 in the Crystal Structure of Concanavalin A Complexed with 5-Fluorouracil


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Concanavalin A Complexed with 5-Fluorouracil within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:17.4
occ:1.00
F5 A:URF301 0.0 17.4 1.0
C5 A:URF301 1.3 16.5 1.0
C6 A:URF301 2.3 16.1 1.0
C4 A:URF301 2.4 16.7 1.0
O4 A:URF301 2.8 16.4 1.0
O A:ALA125 3.5 5.0 1.0
N1 A:URF301 3.6 16.1 1.0
N3 A:URF301 3.6 16.4 1.0
C2 A:URF301 4.1 15.7 1.0
C A:ALA125 4.4 5.0 1.0
CB A:LEU126 4.6 4.2 1.0
N A:ALA125 4.9 6.0 1.0
N A:LEU126 5.0 4.5 1.0

Reference:

S.Rasheed, R.Arif. Crystal Structure of Concanavalin A Complexed with 5-Fluorouracil To Be Published.
Page generated: Wed Jul 16 10:16:15 2025

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