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Fluorine in PDB 8zlo: F0502B-Bound E46K Alpha-Synuclein Fibril

Other elements in 8zlo:

The structure of F0502B-Bound E46K Alpha-Synuclein Fibril also contains other interesting chemical elements:

Bromine (Br) 10 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the F0502B-Bound E46K Alpha-Synuclein Fibril (pdb code 8zlo). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 10 binding sites of Fluorine where determined in the F0502B-Bound E46K Alpha-Synuclein Fibril, PDB code: 8zlo:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 10 in 8zlo

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Fluorine binding site 1 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F101

b:105.5
occ:1.00
 F10 E:1KI101 0.0 105.5 1.0
C09 E:1KI101 1.4 105.5 1.0
C08 E:1KI101 2.4 105.5 1.0
O E:LYS97 2.5 153.8 1.0
CG E:GLN99 2.8 184.4 1.0
NE2 E:GLN99 3.1 184.4 1.0
CD E:GLN99 3.2 184.4 1.0
O07 E:1KI101 3.2 105.5 1.0
CB E:GLN99 3.7 184.4 1.0
C E:LYS97 3.7 153.8 1.0
CB E:LYS97 4.2 153.8 1.0
N E:GLN99 4.2 184.4 1.0
O J:ASP98 4.2 175.0 1.0
OE1 E:GLN99 4.2 184.4 1.0
C09 J:1KI101 4.3 105.5 1.0
C E:ASP98 4.3 175.0 1.0
F10 I:1KI103 4.4 105.5 1.0
C06 E:1KI101 4.4 105.5 1.0
CA E:GLN99 4.5 184.4 1.0
O J:LYS97 4.5 153.8 1.0
CB J:LYS97 4.6 153.8 1.0
CG J:GLN99 4.6 184.4 1.0
CA E:LYS97 4.6 153.8 1.0
C J:LYS97 4.6 153.8 1.0
CA J:LYS97 4.7 153.8 1.0
N E:ASP98 4.7 175.0 1.0
O E:ASP98 4.7 175.0 1.0
CA E:ASP98 4.7 175.0 1.0
C08 J:1KI101 4.7 105.5 1.0
NE2 J:GLN99 5.0 184.4 1.0

Fluorine binding site 2 out of 10 in 8zlo

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Fluorine binding site 2 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F101

b:105.5
occ:1.00
 F10 F:1KI101 0.0 105.5 1.0
C09 F:1KI101 1.4 105.5 1.0
C08 F:1KI101 2.4 105.5 1.0
O F:LYS97 2.5 153.8 1.0
CG F:GLN99 2.8 184.4 1.0
NE2 F:GLN99 3.1 184.4 1.0
CD F:GLN99 3.2 184.4 1.0
O07 F:1KI101 3.2 105.5 1.0
CB F:GLN99 3.7 184.4 1.0
C F:LYS97 3.7 153.8 1.0
CB F:LYS97 4.2 153.8 1.0
N F:GLN99 4.2 184.4 1.0
O H:ASP98 4.2 175.0 1.0
OE1 F:GLN99 4.2 184.4 1.0
C09 H:1KI101 4.3 105.5 1.0
C F:ASP98 4.3 175.0 1.0
F10 G:1KI103 4.4 105.5 1.0
C06 F:1KI101 4.4 105.5 1.0
CA F:GLN99 4.5 184.4 1.0
O H:LYS97 4.5 153.8 1.0
CB H:LYS97 4.6 153.8 1.0
CG H:GLN99 4.6 184.4 1.0
CA F:LYS97 4.6 153.8 1.0
C H:LYS97 4.6 153.8 1.0
CA H:LYS97 4.7 153.8 1.0
N F:ASP98 4.7 175.0 1.0
O F:ASP98 4.7 175.0 1.0
CA F:ASP98 4.7 175.0 1.0
C08 H:1KI101 4.7 105.5 1.0
NE2 H:GLN99 5.0 184.4 1.0

Fluorine binding site 3 out of 10 in 8zlo

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Fluorine binding site 3 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F101

b:61.8
occ:1.00
 F10 G:1KI101 0.0 61.8 1.0
C09 G:1KI101 1.4 61.8 1.0
C08 G:1KI101 2.4 61.8 1.0
O07 G:1KI101 2.5 61.8 1.0
O D:GLY86 3.2 161.9 1.0
CD1 D:ILE88 3.7 146.1 1.0
C06 G:1KI101 3.9 61.8 1.0
C D:GLY86 4.0 161.9 1.0
NZ D:LYS96 4.2 140.8 1.0
O C:GLY86 4.4 161.9 1.0
CD1 C:ILE88 4.4 146.1 1.0
CA D:GLY86 4.5 161.9 1.0
C05 G:1KI101 4.7 61.8 1.0
CG1 D:ILE88 4.8 146.1 1.0
N D:SER87 5.0 154.3 1.0

Fluorine binding site 4 out of 10 in 8zlo

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Fluorine binding site 4 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F102

b:97.6
occ:1.00
 F10 G:1KI102 0.0 97.6 1.0
C09 G:1KI102 1.4 97.6 1.0
C08 G:1KI102 2.4 97.6 1.0
CA C:GLY47 3.3 202.0 1.0
N C:GLY47 3.4 202.0 1.0
O07 G:1KI102 3.4 97.6 1.0
C C:LYS46 3.9 203.1 1.0
O D:LYS46 4.0 203.1 1.0
C C:GLY47 4.1 202.0 1.0
O C:GLY47 4.2 202.0 1.0
O C:LYS46 4.3 203.1 1.0
CG1 D:VAL55 4.3 156.3 1.0
C06 G:1KI102 4.6 97.6 1.0
CD C:LYS45 4.7 201.4 1.0
CA C:LYS46 4.7 203.1 1.0
CA D:GLY47 4.7 202.0 1.0
CG C:LYS45 4.8 201.4 1.0
C D:LYS46 5.0 203.1 1.0

Fluorine binding site 5 out of 10 in 8zlo

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Fluorine binding site 5 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F103

b:105.5
occ:1.00
 F10 G:1KI103 0.0 105.5 1.0
C09 G:1KI103 1.4 105.5 1.0
C08 G:1KI103 2.4 105.5 1.0
O G:LYS97 3.0 153.8 1.0
NE2 G:GLN99 3.2 184.4 1.0
CG G:GLN99 3.2 184.4 1.0
O07 G:1KI103 3.2 105.5 1.0
C09 F:1KI101 3.4 105.5 1.0
CD G:GLN99 3.4 184.4 1.0
C08 F:1KI101 3.9 105.5 1.0
CB G:GLN99 4.1 184.4 1.0
C G:LYS97 4.2 153.8 1.0
O F:LYS97 4.2 153.8 1.0
CG F:GLN99 4.3 184.4 1.0
O F:ASP98 4.3 175.0 1.0
CB F:LYS97 4.3 153.8 1.0
OE1 G:GLN99 4.3 184.4 1.0
F10 F:1KI101 4.4 105.5 1.0
C06 G:1KI103 4.4 105.5 1.0
CB G:LYS97 4.4 153.8 1.0
C F:LYS97 4.5 153.8 1.0
NE2 F:GLN99 4.5 184.4 1.0
CA F:LYS97 4.6 153.8 1.0
N G:GLN99 4.7 184.4 1.0
C06 F:1KI101 4.7 105.5 1.0
O07 F:1KI101 4.8 105.5 1.0
C G:ASP98 4.9 175.0 1.0
CD F:GLN99 4.9 184.4 1.0
CA G:GLN99 5.0 184.4 1.0

Fluorine binding site 6 out of 10 in 8zlo

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Fluorine binding site 6 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
H:F101

b:105.5
occ:1.00
 F10 H:1KI101 0.0 105.5 1.0
C09 H:1KI101 1.4 105.5 1.0
C08 H:1KI101 2.4 105.5 1.0
O H:LYS97 2.5 153.8 1.0
CG H:GLN99 3.1 184.4 1.0
O07 H:1KI101 3.2 105.5 1.0
NE2 H:GLN99 3.4 184.4 1.0
CD H:GLN99 3.5 184.4 1.0
C H:LYS97 3.8 153.8 1.0
CB H:GLN99 3.9 184.4 1.0
CB O:LYS97 4.1 153.8 1.0
O O:LYS97 4.1 153.8 1.0
CB H:LYS97 4.2 153.8 1.0
N H:GLN99 4.3 184.4 1.0
O O:ASP98 4.3 175.0 1.0
CA O:LYS97 4.3 153.8 1.0
C O:LYS97 4.3 153.8 1.0
C06 H:1KI101 4.4 105.5 1.0
OE1 H:GLN99 4.4 184.4 1.0
C H:ASP98 4.4 175.0 1.0
CG O:GLN99 4.5 184.4 1.0
CA H:LYS97 4.6 153.8 1.0
CA H:GLN99 4.7 184.4 1.0
N H:ASP98 4.7 175.0 1.0
CA H:ASP98 4.7 175.0 1.0
CD O:LYS97 4.8 153.8 1.0
NE2 O:GLN99 4.8 184.4 1.0
O H:ASP98 4.9 175.0 1.0

Fluorine binding site 7 out of 10 in 8zlo

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Fluorine binding site 7 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
I:F101

b:61.8
occ:1.00
 F10 I:1KI101 0.0 61.8 1.0
C09 I:1KI101 1.4 61.8 1.0
C08 I:1KI101 2.4 61.8 1.0
O07 I:1KI101 2.4 61.8 1.0
NZ B:LYS96 2.9 140.8 1.0
C06 I:1KI101 3.8 61.8 1.0
CE B:LYS96 4.1 140.8 1.0
CD B:LYS96 4.3 140.8 1.0
CD1 B:ILE88 4.3 146.1 1.0
O B:GLY86 4.4 161.9 1.0
C05 I:1KI101 4.7 61.8 1.0

Fluorine binding site 8 out of 10 in 8zlo

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Fluorine binding site 8 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
I:F102

b:97.6
occ:1.00
 F10 I:1KI102 0.0 97.6 1.0
C09 I:1KI102 1.4 97.6 1.0
C08 I:1KI102 2.4 97.6 1.0
CA A:GLY47 3.3 202.0 1.0
N A:GLY47 3.4 202.0 1.0
O07 I:1KI102 3.4 97.6 1.0
C A:LYS46 3.9 203.1 1.0
O B:LYS46 4.0 203.1 1.0
C A:GLY47 4.1 202.0 1.0
O A:GLY47 4.2 202.0 1.0
O A:LYS46 4.3 203.1 1.0
CG1 B:VAL55 4.3 156.3 1.0
C06 I:1KI102 4.6 97.6 1.0
CD A:LYS45 4.7 201.4 1.0
CA A:LYS46 4.7 203.1 1.0
CA B:GLY47 4.7 202.0 1.0
CG A:LYS45 4.8 201.4 1.0
C B:LYS46 5.0 203.1 1.0

Fluorine binding site 9 out of 10 in 8zlo

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Fluorine binding site 9 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
I:F103

b:105.5
occ:1.00
 F10 I:1KI103 0.0 105.5 1.0
C09 I:1KI103 1.4 105.5 1.0
C08 I:1KI103 2.4 105.5 1.0
O I:LYS97 3.0 153.8 1.0
NE2 I:GLN99 3.2 184.4 1.0
CG I:GLN99 3.2 184.4 1.0
O07 I:1KI103 3.2 105.5 1.0
C09 E:1KI101 3.4 105.5 1.0
CD I:GLN99 3.4 184.4 1.0
C08 E:1KI101 3.9 105.5 1.0
CB I:GLN99 4.1 184.4 1.0
C I:LYS97 4.2 153.8 1.0
O E:LYS97 4.2 153.8 1.0
CG E:GLN99 4.3 184.4 1.0
O E:ASP98 4.3 175.0 1.0
CB E:LYS97 4.3 153.8 1.0
OE1 I:GLN99 4.3 184.4 1.0
F10 E:1KI101 4.4 105.5 1.0
C06 I:1KI103 4.4 105.5 1.0
CB I:LYS97 4.4 153.8 1.0
C E:LYS97 4.5 153.8 1.0
NE2 E:GLN99 4.5 184.4 1.0
CA E:LYS97 4.6 153.8 1.0
N I:GLN99 4.7 184.4 1.0
C06 E:1KI101 4.7 105.5 1.0
O07 E:1KI101 4.8 105.5 1.0
C I:ASP98 4.9 175.0 1.0
CD E:GLN99 4.9 184.4 1.0
CA I:GLN99 5.0 184.4 1.0

Fluorine binding site 10 out of 10 in 8zlo

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Fluorine binding site 10 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
J:F101

b:105.5
occ:1.00
 F10 J:1KI101 0.0 105.5 1.0
C09 J:1KI101 1.4 105.5 1.0
C08 J:1KI101 2.4 105.5 1.0
O J:LYS97 2.5 153.8 1.0
CG J:GLN99 3.1 184.4 1.0
O07 J:1KI101 3.2 105.5 1.0
NE2 J:GLN99 3.4 184.4 1.0
CD J:GLN99 3.5 184.4 1.0
C J:LYS97 3.8 153.8 1.0
CB J:GLN99 3.9 184.4 1.0
CB T:LYS97 4.1 153.8 1.0
O T:LYS97 4.1 153.8 1.0
CB J:LYS97 4.2 153.8 1.0
N J:GLN99 4.3 184.4 1.0
O T:ASP98 4.3 175.0 1.0
CA T:LYS97 4.3 153.8 1.0
C T:LYS97 4.3 153.8 1.0
C06 J:1KI101 4.4 105.5 1.0
OE1 J:GLN99 4.4 184.4 1.0
C J:ASP98 4.4 175.0 1.0
CG T:GLN99 4.5 184.4 1.0
CA J:LYS97 4.6 153.8 1.0
CA J:GLN99 4.7 184.4 1.0
N J:ASP98 4.7 175.0 1.0
CA J:ASP98 4.7 175.0 1.0
CD T:LYS97 4.7 153.8 1.0
NE2 T:GLN99 4.8 184.4 1.0
O J:ASP98 4.9 175.0 1.0

Reference:

K.Liu, Y.Tao, Q.Zhao, W.Xia, X.Li, S.Zhang, Y.Yao, H.Xiang, C.Han, L.Tan, B.Sun, D.Li, A.Li, C.Liu. Binding Adaptability of Chemical Ligands to Polymorphic Alpha-Synuclein Amyloid Fibrils. Proc.Natl.Acad.Sci.Usa V. 121 33121 2024.
ISSN: ESSN 1091-6490
PubMed: 39172784
DOI: 10.1073/PNAS.2321633121
Page generated: Wed Jul 16 10:16:55 2025

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