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Fluorine in PDB 9b2d: Yeast RAD51-Ssdna Filament

Other elements in 9b2d:

The structure of Yeast RAD51-Ssdna Filament also contains other interesting chemical elements:

Aluminium (Al) 6 atoms
Magnesium (Mg) 6 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Fluorine atom in the Yeast RAD51-Ssdna Filament (pdb code 9b2d). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 18 binding sites of Fluorine where determined in the Yeast RAD51-Ssdna Filament, PDB code: 9b2d:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 18 in 9b2d

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Fluorine binding site 1 out of 18 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Yeast RAD51-Ssdna Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F502

b:18.0
occ:1.00
 F1 C:AF3502 0.0 18.0 1.0
AL C:AF3502 1.6 21.0 1.0
F3 C:AF3502 2.8 13.8 1.0
F2 C:AF3502 2.8 17.7 1.0
OG1 C:THR223 2.8 15.8 1.0
OG C:SER192 2.9 4.8 1.0
OE1 C:GLU221 3.4 14.5 1.0
OD1 C:ASP280 3.6 21.1 1.0
OD2 C:ASP280 3.7 9.1 1.0
CB C:THR223 3.8 13.6 1.0
CG2 C:THR223 4.0 13.7 1.0
CG C:ASP280 4.0 11.2 1.0
CD C:GLU221 4.0 20.2 1.0
CB C:SER192 4.2 1.6 1.0
O2B C:ADP501 4.2 6.0 1.0
CB C:GLU221 4.5 6.0 1.0
OE2 C:GLU221 4.6 17.7 1.0
CG C:GLU221 4.7 7.1 1.0
MG C:MG503 4.7 6.9 1.0

Fluorine binding site 2 out of 18 in 9b2d

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Fluorine binding site 2 out of 18 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Yeast RAD51-Ssdna Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F502

b:17.7
occ:1.00
 F2 C:AF3502 0.0 17.7 1.0
AL C:AF3502 1.6 21.0 1.0
OG C:SER192 2.5 4.8 1.0
O2B C:ADP501 2.7 6.0 1.0
F1 C:AF3502 2.8 18.0 1.0
F3 C:AF3502 2.8 13.8 1.0
O1A C:ADP501 3.1 12.1 1.0
CB C:SER192 3.3 1.6 1.0
PB C:ADP501 3.5 0.0 1.0
O1B C:ADP501 3.6 20.7 1.0
O3A C:ADP501 3.8 11.7 1.0
PA C:ADP501 3.9 1.9 1.0
MG C:MG503 4.0 6.9 1.0
OG1 C:THR223 4.1 15.8 1.0
CB C:THR223 4.2 13.6 1.0
CG2 C:THR223 4.3 13.7 1.0
O2A C:ADP501 4.5 12.5 1.0
CA C:SER192 4.6 5.3 1.0
N C:SER192 4.7 4.3 1.0
O3B C:ADP501 5.0 0.0 1.0

Fluorine binding site 3 out of 18 in 9b2d

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Fluorine binding site 3 out of 18 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Yeast RAD51-Ssdna Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F502

b:13.8
occ:1.00
 F3 C:AF3502 0.0 13.8 1.0
AL C:AF3502 1.6 21.0 1.0
O2B C:ADP501 2.0 6.0 1.0
OG C:SER192 2.3 4.8 1.0
F1 C:AF3502 2.8 18.0 1.0
F2 C:AF3502 2.8 17.7 1.0
PB C:ADP501 3.2 0.0 1.0
CB C:SER192 3.5 1.6 1.0
O1B C:ADP501 3.6 20.7 1.0
N C:SER192 3.6 4.3 1.0
MG C:MG503 3.9 6.9 1.0
OD1 C:ASP280 3.9 21.1 1.0
CE C:LYS191 3.9 10.7 1.0
CB C:LYS191 3.9 4.4 1.0
O3B C:ADP501 4.0 0.0 1.0
CA C:SER192 4.1 5.3 1.0
C C:LYS191 4.4 8.7 1.0
OD2 C:ASP280 4.4 9.1 1.0
O3A C:ADP501 4.4 11.7 1.0
NZ C:LYS191 4.5 1.4 1.0
CG C:ASP280 4.6 11.2 1.0
CA C:LYS191 4.6 2.7 1.0
N C:LYS191 4.9 11.9 1.0
CG C:LYS191 4.9 9.8 1.0
CD C:LYS191 4.9 11.0 1.0
O2A C:ADP501 4.9 12.5 1.0
O1A C:ADP501 5.0 12.1 1.0
PA C:ADP501 5.0 1.9 1.0

Fluorine binding site 4 out of 18 in 9b2d

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Fluorine binding site 4 out of 18 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Yeast RAD51-Ssdna Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F502

b:23.1
occ:1.00
 F1 D:AF3502 0.0 23.1 1.0
AL D:AF3502 1.6 35.5 1.0
O2B D:ADP501 1.9 9.5 1.0
OG D:SER192 2.1 14.3 1.0
F3 D:AF3502 2.8 29.8 1.0
F2 D:AF3502 2.8 25.2 1.0
PB D:ADP501 3.2 4.7 1.0
CB D:SER192 3.3 10.9 1.0
N D:SER192 3.4 10.0 1.0
O3B D:ADP501 3.5 24.8 1.0
CA D:SER192 3.9 4.7 1.0
CB D:LYS191 4.0 7.8 1.0
MG D:MG503 4.0 11.0 1.0
OD1 D:ASP280 4.0 22.0 1.0
O1B D:ADP501 4.1 6.4 1.0
C D:LYS191 4.2 11.0 1.0
OD2 D:ASP280 4.3 17.1 1.0
CE D:LYS191 4.3 12.3 1.0
O3A D:ADP501 4.3 8.0 1.0
CA D:LYS191 4.5 4.7 1.0
O2A D:ADP501 4.6 19.4 1.0
CG D:ASP280 4.6 11.8 1.0
PA D:ADP501 4.7 5.3 1.0
N D:LYS191 4.7 7.5 1.0
O1A D:ADP501 4.7 15.8 1.0
NZ D:LYS191 4.7 6.2 1.0
CG D:LYS191 5.0 5.8 1.0

Fluorine binding site 5 out of 18 in 9b2d

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Fluorine binding site 5 out of 18 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Yeast RAD51-Ssdna Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F502

b:25.2
occ:1.00
 F2 D:AF3502 0.0 25.2 1.0
AL D:AF3502 1.6 35.5 1.0
OG D:SER192 2.5 14.3 1.0
F3 D:AF3502 2.8 29.8 1.0
F1 D:AF3502 2.8 23.1 1.0
O2B D:ADP501 2.9 9.5 1.0
O1A D:ADP501 3.1 15.8 1.0
CB D:SER192 3.3 10.9 1.0
PB D:ADP501 3.7 4.7 1.0
O3B D:ADP501 3.8 24.8 1.0
PA D:ADP501 3.9 5.3 1.0
O3A D:ADP501 3.9 8.0 1.0
OG1 D:THR223 4.0 22.9 1.0
MG D:MG503 4.0 11.0 1.0
CB D:THR223 4.1 19.8 1.0
CG2 D:THR223 4.2 21.6 1.0
O2A D:ADP501 4.4 19.4 1.0
CA D:SER192 4.6 4.7 1.0
N D:SER192 4.7 10.0 1.0

Fluorine binding site 6 out of 18 in 9b2d

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Fluorine binding site 6 out of 18 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Yeast RAD51-Ssdna Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F502

b:29.8
occ:1.00
 F3 D:AF3502 0.0 29.8 1.0
AL D:AF3502 1.6 35.5 1.0
F1 D:AF3502 2.8 23.1 1.0
F2 D:AF3502 2.8 25.2 1.0
OG1 D:THR223 2.9 22.9 1.0
OG D:SER192 3.0 14.3 1.0
OE1 D:GLU221 3.4 28.0 1.0
OD1 D:ASP280 3.7 22.0 1.0
CB D:THR223 3.9 19.8 1.0
OD2 D:ASP280 3.9 17.1 1.0
CD D:GLU221 4.0 28.6 1.0
CG2 D:THR223 4.1 21.6 1.0
CG D:ASP280 4.1 11.8 1.0
O2B D:ADP501 4.3 9.5 1.0
CB D:SER192 4.3 10.9 1.0
OE2 D:GLU221 4.4 29.0 1.0
CB D:GLU221 4.5 19.1 1.0
MG D:MG503 4.6 11.0 1.0
CG D:GLU221 4.8 11.7 1.0

Fluorine binding site 7 out of 18 in 9b2d

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Fluorine binding site 7 out of 18 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Yeast RAD51-Ssdna Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F502

b:20.2
occ:1.00
 F1 E:AF3502 0.0 20.2 1.0
AL E:AF3502 1.6 26.8 1.0
O2B E:ADP501 2.0 10.1 1.0
OG E:SER192 2.2 13.4 1.0
F3 E:AF3502 2.8 20.4 1.0
F2 E:AF3502 2.8 20.8 1.0
PB E:ADP501 3.2 0.0 1.0
CB E:SER192 3.4 6.6 1.0
N E:SER192 3.5 7.4 1.0
O1B E:ADP501 3.6 26.5 1.0
OD1 E:ASP280 3.9 25.3 1.0
CA E:SER192 3.9 7.4 1.0
CB E:LYS191 4.0 0.0 1.0
MG E:MG503 4.0 1.8 1.0
O3B E:ADP501 4.0 3.4 1.0
CE E:LYS191 4.1 14.7 1.0
C E:LYS191 4.2 8.5 1.0
OD2 E:ASP280 4.3 17.2 1.0
O3A E:ADP501 4.4 10.3 1.0
CG E:ASP280 4.5 8.1 1.0
CA E:LYS191 4.5 3.4 1.0
O2A E:ADP501 4.6 18.8 1.0
NZ E:LYS191 4.7 1.9 1.0
PA E:ADP501 4.8 8.9 1.0
N E:LYS191 4.8 14.6 1.0
O1A E:ADP501 4.8 17.8 1.0

Fluorine binding site 8 out of 18 in 9b2d

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Fluorine binding site 8 out of 18 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Yeast RAD51-Ssdna Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F502

b:20.8
occ:1.00
 F2 E:AF3502 0.0 20.8 1.0
AL E:AF3502 1.6 26.8 1.0
OG E:SER192 2.5 13.4 1.0
F3 E:AF3502 2.8 20.4 1.0
F1 E:AF3502 2.8 20.2 1.0
O2B E:ADP501 2.8 10.1 1.0
O1A E:ADP501 3.0 17.8 1.0
CB E:SER192 3.4 6.6 1.0
PB E:ADP501 3.6 0.0 1.0
O1B E:ADP501 3.7 26.5 1.0
PA E:ADP501 3.9 8.9 1.0
O3A E:ADP501 3.9 10.3 1.0
MG E:MG503 4.0 1.8 1.0
OG1 E:THR223 4.0 21.0 1.0
CB E:THR223 4.1 18.7 1.0
CG2 E:THR223 4.2 20.3 1.0
O2A E:ADP501 4.4 18.8 1.0
CA E:SER192 4.7 7.4 1.0
N E:SER192 4.7 7.4 1.0

Fluorine binding site 9 out of 18 in 9b2d

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Fluorine binding site 9 out of 18 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Yeast RAD51-Ssdna Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F502

b:20.4
occ:1.00
 F3 E:AF3502 0.0 20.4 1.0
AL E:AF3502 1.6 26.8 1.0
F1 E:AF3502 2.8 20.2 1.0
F2 E:AF3502 2.8 20.8 1.0
OG1 E:THR223 2.9 21.0 1.0
OG E:SER192 2.9 13.4 1.0
OE1 E:GLU221 3.3 28.1 1.0
OD1 E:ASP280 3.7 25.3 1.0
OD2 E:ASP280 3.7 17.2 1.0
CB E:THR223 3.8 18.7 1.0
CD E:GLU221 3.9 27.0 1.0
CG2 E:THR223 4.0 20.3 1.0
CG E:ASP280 4.0 8.1 1.0
CB E:SER192 4.2 6.6 1.0
O2B E:ADP501 4.3 10.1 1.0
OE2 E:GLU221 4.5 24.9 1.0
CB E:GLU221 4.5 19.5 1.0
CG E:GLU221 4.7 16.6 1.0
MG E:MG503 4.7 1.8 1.0

Fluorine binding site 10 out of 18 in 9b2d

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Fluorine binding site 10 out of 18 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Yeast RAD51-Ssdna Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F502

b:24.5
occ:1.00
 F1 F:AF3502 0.0 24.5 1.0
AL F:AF3502 1.6 29.8 1.0
O2B F:ADP501 2.0 15.3 1.0
OG F:SER192 2.7 16.4 1.0
F3 F:AF3502 2.8 28.5 1.0
F2 F:AF3502 2.8 37.0 1.0
PB F:ADP501 3.2 8.8 1.0
CB F:SER192 3.5 17.3 1.0
O3B F:ADP501 3.5 31.0 1.0
N F:SER192 3.8 13.2 1.0
MG F:MG503 3.9 16.4 1.0
OD1 F:ASP280 4.0 30.8 1.0
O1B F:ADP501 4.0 16.2 1.0
CA F:SER192 4.1 14.9 1.0
CB F:LYS191 4.2 8.9 1.0
CE F:LYS191 4.2 17.0 1.0
OD2 F:ASP280 4.2 18.6 1.0
O3A F:ADP501 4.4 17.1 1.0
C F:LYS191 4.5 11.9 1.0
CG F:ASP280 4.6 15.9 1.0
NZ F:LYS191 4.7 10.1 1.0
O1A F:ADP501 4.7 22.1 1.0
O2A F:ADP501 4.8 29.6 1.0
CA F:LYS191 4.8 7.2 1.0
PA F:ADP501 4.8 15.8 1.0
N F:LYS191 5.0 14.7 1.0

Reference:

J.Liu, S.Gore, W.-D.Heyer. Yeast RAD51-Ssdna Filament To Be Published.
Page generated: Wed Jul 16 10:25:32 2025

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