Fluorine in PDB 9nr7: The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex (pdb code 9nr7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex, PDB code: 9nr7:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:64.5 occ:1.00 FAF A:ZK1901 0.0 64.5 1.0 CAZ A:ZK1901 1.3 64.5 1.0 FAH A:ZK1901 2.1 64.5 1.0 FAG A:ZK1901 2.1 64.5 1.0 CAS A:ZK1901 2.4 64.5 1.0 CAJ A:ZK1901 2.7 64.5 1.0 OH A:TYR728 3.2 41.3 1.0 CAR A:ZK1901 3.6 64.5 1.0 CZ A:TYR728 4.0 41.3 1.0 CAV A:ZK1901 4.1 64.5 1.0 NAX A:ZK1901 4.2 64.5 1.0 CE1 A:TYR728 4.4 41.3 1.0 OH A:TYR401 4.7 51.3 1.0 CE2 A:TYR401 4.7 51.3 1.0 CAI A:ZK1901 4.8 64.5 1.0 CE2 A:TYR728 4.9 41.3 1.0 OG1 A:THR703 4.9 43.7 1.0 OH A:TYR446 4.9 69.9 1.0 NAP A:ZK1901 4.9 64.5 1.0 CAW A:ZK1901 5.0 64.5 1.0 CG A:PRO474 5.0 36.9 1.0

Fluorine binding site 2 out of 12 in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:64.5 occ:1.00 FAG A:ZK1901 0.0 64.5 1.0 CAZ A:ZK1901 1.3 64.5 1.0 FAF A:ZK1901 2.1 64.5 1.0 FAH A:ZK1901 2.2 64.5 1.0 CAS A:ZK1901 2.4 64.5 1.0 NAX A:ZK1901 2.7 64.5 1.0 CAR A:ZK1901 2.9 64.5 1.0 CAM A:ZK1901 3.4 64.5 1.0 CAJ A:ZK1901 3.5 64.5 1.0 CAN A:ZK1901 3.8 64.5 1.0 CAK A:ZK1901 3.9 64.5 1.0 OH A:TYR728 4.0 41.3 1.0 CAI A:ZK1901 4.2 64.5 1.0 CAL A:ZK1901 4.3 64.5 1.0 OE1 A:GLU701 4.5 56.7 1.0 OG1 A:THR703 4.5 43.7 1.0 CAV A:ZK1901 4.6 64.5 1.0 CB A:MET704 4.7 55.6 1.0 OAQ A:ZK1901 4.7 64.5 1.0 SD A:MET704 4.9 55.6 1.0 CAW A:ZK1901 5.0 64.5 1.0 CD A:GLU701 5.0 56.7 1.0

Fluorine binding site 3 out of 12 in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:64.5 occ:1.00 FAH A:ZK1901 0.0 64.5 1.0 CAZ A:ZK1901 1.3 64.5 1.0 FAF A:ZK1901 2.1 64.5 1.0 FAG A:ZK1901 2.2 64.5 1.0 CAS A:ZK1901 2.4 64.5 1.0 NAX A:ZK1901 3.0 64.5 1.0 CAR A:ZK1901 3.0 64.5 1.0 CAJ A:ZK1901 3.4 64.5 1.0 CAN A:ZK1901 3.4 64.5 1.0 OH A:TYR446 3.8 69.9 1.0 CAL A:ZK1901 4.1 64.5 1.0 CB A:GLU398 4.2 65.0 1.0 CAM A:ZK1901 4.3 64.5 1.0 CAI A:ZK1901 4.3 64.5 1.0 CG A:GLU398 4.5 65.0 1.0 CAV A:ZK1901 4.6 64.5 1.0 CZ A:TYR446 4.8 69.9 1.0 CAK A:ZK1901 4.8 64.5 1.0 CAW A:ZK1901 5.0 64.5 1.0

Fluorine binding site 4 out of 12 in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F901 b:65.6 occ:1.00 FAF B:ZK1901 0.0 65.6 1.0 CAZ B:ZK1901 1.3 65.6 1.0 FAH B:ZK1901 2.1 65.6 1.0 FAG B:ZK1901 2.1 65.6 1.0 CAS B:ZK1901 2.4 65.6 1.0 OH B:TYR734 2.5 36.9 1.0 CAJ B:ZK1901 2.7 65.6 1.0 CZ B:TYR734 3.3 36.9 1.0 CB B:PRO480 3.4 59.0 1.0 CAR B:ZK1901 3.6 65.6 1.0 CE1 B:TYR734 3.9 36.9 1.0 CG2 B:THR709 4.0 49.4 1.0 CE2 B:TYR734 4.0 36.9 1.0 CG B:PRO480 4.0 59.0 1.0 CAV B:ZK1901 4.1 65.6 1.0 OE1 B:GLU707 4.2 46.6 1.0 NAX B:ZK1901 4.2 65.6 1.0 CE1 B:TYR407 4.3 67.2 1.0 OH B:TYR407 4.7 67.2 1.0 CA B:PRO480 4.7 59.0 1.0 CAI B:ZK1901 4.8 65.6 1.0 O B:PRO480 4.9 59.0 1.0 NAP B:ZK1901 4.9 65.6 1.0 CAW B:ZK1901 5.0 65.6 1.0 CZ B:TYR407 5.0 67.2 1.0

Fluorine binding site 5 out of 12 in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F901 b:65.6 occ:1.00 FAG B:ZK1901 0.0 65.6 1.0 CAZ B:ZK1901 1.3 65.6 1.0 FAF B:ZK1901 2.1 65.6 1.0 FAH B:ZK1901 2.2 65.6 1.0 CAS B:ZK1901 2.4 65.6 1.0 NAX B:ZK1901 2.8 65.6 1.0 CAR B:ZK1901 2.9 65.6 1.0 OE1 B:GLU707 3.3 46.6 1.0 OH B:TYR734 3.3 36.9 1.0 CAM B:ZK1901 3.4 65.6 1.0 CAJ B:ZK1901 3.5 65.6 1.0 CG2 B:THR709 3.6 49.4 1.0 CAN B:ZK1901 4.0 65.6 1.0 CAK B:ZK1901 4.0 65.6 1.0 CD B:GLU707 4.2 46.6 1.0 CAI B:ZK1901 4.2 65.6 1.0 CAL B:ZK1901 4.5 65.6 1.0 CB B:GLU707 4.5 46.6 1.0 CZ B:TYR734 4.6 36.9 1.0 CAV B:ZK1901 4.6 65.6 1.0 CG B:GLU707 4.7 46.6 1.0 CB B:MET710 4.7 54.3 1.0 OAQ B:ZK1901 4.8 65.6 1.0 N B:MET710 4.9 54.3 1.0 CAW B:ZK1901 5.0 65.6 1.0

Fluorine binding site 6 out of 12 in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F901 b:65.6 occ:1.00 FAH B:ZK1901 0.0 65.6 1.0 CAZ B:ZK1901 1.3 65.6 1.0 FAF B:ZK1901 2.1 65.6 1.0 FAG B:ZK1901 2.2 65.6 1.0 CAS B:ZK1901 2.4 65.6 1.0 NAX B:ZK1901 3.0 65.6 1.0 CAR B:ZK1901 3.0 65.6 1.0 CAJ B:ZK1901 3.4 65.6 1.0 CAN B:ZK1901 3.4 65.6 1.0 OH B:TYR452 3.9 78.9 1.0 CAL B:ZK1901 4.0 65.6 1.0 CAM B:ZK1901 4.2 65.6 1.0 CAI B:ZK1901 4.3 65.6 1.0 CZ B:TYR452 4.3 78.9 1.0 CD B:PRO406 4.4 64.1 1.0 OH B:TYR734 4.5 36.9 1.0 CE2 B:TYR452 4.5 78.9 1.0 CAV B:ZK1901 4.6 65.6 1.0 CG B:PRO480 4.6 59.0 1.0 CB B:PRO480 4.7 59.0 1.0 CAK B:ZK1901 4.7 65.6 1.0 CB B:SER405 4.8 71.6 1.0 CE1 B:TYR407 4.9 67.2 1.0 CAW B:ZK1901 5.0 65.6 1.0

Fluorine binding site 7 out of 12 in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F901 b:48.4 occ:1.00 FAF C:ZK1901 0.0 48.4 1.0 CAZ C:ZK1901 1.3 48.4 1.0 FAH C:ZK1901 2.1 48.4 1.0 FAG C:ZK1901 2.1 48.4 1.0 CAS C:ZK1901 2.4 48.4 1.0 NAX C:ZK1901 2.5 48.4 1.0 CAR C:ZK1901 2.8 48.4 1.0 CAN C:ZK1901 3.2 48.4 1.0 CAM C:ZK1901 3.5 48.4 1.0 CAJ C:ZK1901 3.6 48.4 1.0 CAL C:ZK1901 3.7 48.4 1.0 OE2 C:GLU398 3.8 60.8 1.0 CAK C:ZK1901 3.9 48.4 1.0 CD C:GLU398 4.1 60.8 1.0 CAI C:ZK1901 4.1 48.4 1.0 CG C:GLU398 4.2 60.8 1.0 OAQ C:ZK1901 4.4 48.4 1.0 OH C:TYR446 4.6 55.9 1.0 CAV C:ZK1901 4.7 48.4 1.0 OH C:TYR728 4.8 31.7 1.0 OE1 C:GLU398 4.8 60.8 1.0 CG C:PRO400 4.9 59.3 1.0 CAW C:ZK1901 5.0 48.4 1.0

Fluorine binding site 8 out of 12 in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F901 b:48.4 occ:1.00 FAG C:ZK1901 0.0 48.4 1.0 CAZ C:ZK1901 1.3 48.4 1.0 FAF C:ZK1901 2.1 48.4 1.0 FAH C:ZK1901 2.2 48.4 1.0 CAS C:ZK1901 2.4 48.4 1.0 CAJ C:ZK1901 2.8 48.4 1.0 CB C:PRO474 3.3 31.2 1.0 OH C:TYR728 3.5 31.7 1.0 CAR C:ZK1901 3.6 48.4 1.0 CG C:PRO474 3.7 31.2 1.0 CE2 C:TYR401 4.0 50.3 1.0 NAX C:ZK1901 4.1 48.4 1.0 CE2 C:TYR728 4.1 31.7 1.0 CAV C:ZK1901 4.1 48.4 1.0 CZ C:TYR728 4.3 31.7 1.0 CD2 C:TYR401 4.4 50.3 1.0 CG C:GLU398 4.4 60.8 1.0 OH C:TYR446 4.7 55.9 1.0 CAI C:ZK1901 4.7 48.4 1.0 CA C:PRO474 4.7 31.2 1.0 CD C:GLU398 4.8 60.8 1.0 CAW C:ZK1901 5.0 48.4 1.0 CAN C:ZK1901 5.0 48.4 1.0

Fluorine binding site 9 out of 12 in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F901 b:48.4 occ:1.00 FAH C:ZK1901 0.0 48.4 1.0 CAZ C:ZK1901 1.3 48.4 1.0 FAF C:ZK1901 2.1 48.4 1.0 FAG C:ZK1901 2.2 48.4 1.0 CAS C:ZK1901 2.4 48.4 1.0 OH C:TYR728 2.9 31.7 1.0 CAR C:ZK1901 3.2 48.4 1.0 CAJ C:ZK1901 3.2 48.4 1.0 NAX C:ZK1901 3.4 48.4 1.0 CAM C:ZK1901 3.7 48.4 1.0 CZ C:TYR728 4.1 31.7 1.0 CAI C:ZK1901 4.4 48.4 1.0 CAV C:ZK1901 4.4 48.4 1.0 CAK C:ZK1901 4.5 48.4 1.0 CE2 C:TYR728 4.5 31.7 1.0 CB C:GLU701 4.5 43.7 1.0 CD1 C:LEU494 4.5 42.3 1.0 CAN C:ZK1901 4.7 48.4 1.0 CB C:THR703 4.8 42.5 1.0 CAW C:ZK1901 5.0 48.4 1.0

Fluorine binding site 10 out of 12 in the The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of The Structure of GLUA1/A4 Lbd-Tmd in Noelin-Ampar Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:F901 b:65.3 occ:1.00 FAF D:ZK1901 0.0 65.3 1.0 CAZ D:ZK1901 1.3 65.3 1.0 FAG D:ZK1901 2.1 65.3 1.0 FAH D:ZK1901 2.1 65.3 1.0 CAS D:ZK1901 2.4 65.3 1.0 OH D:TYR734 2.4 41.2 1.0 CAJ D:ZK1901 2.7 65.3 1.0 CZ D:TYR734 3.5 41.2 1.0 CG2 D:THR709 3.5 55.9 1.0 CAR D:ZK1901 3.6 65.3 1.0 CE2 D:TYR734 3.7 41.2 1.0 CAV D:ZK1901 4.1 65.3 1.0 NAX D:ZK1901 4.2 65.3 1.0 CG D:GLU707 4.4 44.6 1.0 CE2 D:TYR407 4.6 83.0 1.0 CE1 D:TYR734 4.7 41.2 1.0 CAI D:ZK1901 4.7 65.3 1.0 OH D:TYR452 4.8 63.5 1.0 CB D:THR709 4.9 55.9 1.0 NAP D:ZK1901 4.9 65.3 1.0 CAM D:ZK1901 4.9 65.3 1.0 CAW D:ZK1901 5.0 65.3 1.0 OE2 D:GLU404 5.0 90.8 1.0 CB D:GLU707 5.0 44.6 1.0

C.Fang, C.J.Spangler, J.Park, N.Sheldon, L.O.Trussell, E.Gouaux. Gating and Noelin Clustering of Native CA2+-Permeable Ampa Receptors Nature 2025.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-025-09289-0