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Fluorine in PDB 9q97: Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2

Enzymatic activity of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2

All present enzymatic activity of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2:
2.7.7.6;

Other elements in 9q97:

The structure of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 also contains other interesting chemical elements:

Aluminium (Al) 5 atoms
Magnesium (Mg) 5 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Fluorine atom in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 (pdb code 9q97). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 15 binding sites of Fluorine where determined in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2, PDB code: 9q97:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 15 in 9q97

Go back to Fluorine Binding Sites List in 9q97
Fluorine binding site 1 out of 15 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
1:F602

b:218.6
occ:1.00
 F1 1:AF3602 0.0 218.6 1.0
AL 1:AF3602 1.6 218.6 1.0
F2 1:AF3602 2.8 218.6 1.0
F3 1:AF3602 2.8 218.6 1.0
O1B 1:ADP601 3.7 226.6 1.0
CA 1:THR148 3.7 257.5 1.0
O3B 1:ADP601 3.8 226.6 1.0
PB 1:ADP601 4.0 226.6 1.0
MG 1:MG603 4.0 484.6 1.0
CB 1:THR148 4.0 257.5 1.0
O2B 1:ADP601 4.2 226.6 1.0
N 1:THR148 4.5 257.5 1.0
C 1:THR148 4.5 257.5 1.0

Fluorine binding site 2 out of 15 in 9q97

Go back to Fluorine Binding Sites List in 9q97
Fluorine binding site 2 out of 15 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
1:F602

b:218.6
occ:1.00
 F2 1:AF3602 0.0 218.6 1.0
AL 1:AF3602 1.6 218.6 1.0
MG 1:MG603 2.7 484.6 1.0
F3 1:AF3602 2.8 218.6 1.0
F1 1:AF3602 2.8 218.6 1.0
O1B 1:ADP601 2.9 226.6 1.0
CB 1:THR148 3.9 257.5 1.0
PB 1:ADP601 4.0 226.6 1.0
O3B 1:ADP601 4.1 226.6 1.0
CA 1:THR148 4.4 257.5 1.0
O1A 1:ADP601 4.7 226.6 1.0
N 1:THR148 4.9 257.5 1.0
O2B 1:ADP601 5.0 226.6 1.0

Fluorine binding site 3 out of 15 in 9q97

Go back to Fluorine Binding Sites List in 9q97
Fluorine binding site 3 out of 15 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
1:F602

b:218.6
occ:1.00
 F3 1:AF3602 0.0 218.6 1.0
AL 1:AF3602 1.6 218.6 1.0
MG 1:MG603 2.0 484.6 1.0
F2 1:AF3602 2.8 218.6 1.0
F1 1:AF3602 2.8 218.6 1.0
O1B 1:ADP601 3.2 226.6 1.0
PB 1:ADP601 4.2 226.6 1.0
O2B 1:ADP601 4.3 226.6 1.0
CB 1:THR148 4.9 257.5 1.0
O3B 1:ADP601 5.0 226.6 1.0

Fluorine binding site 4 out of 15 in 9q97

Go back to Fluorine Binding Sites List in 9q97
Fluorine binding site 4 out of 15 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
2:F602

b:863.0
occ:1.00
 F1 2:AF3602 0.0 863.0 1.0
AL 2:AF3602 1.6 863.0 1.0
O 2:GLY36 2.4 870.9 1.0
O 2:THR148 2.5 828.1 1.0
O 2:GLU37 2.5 848.7 1.0
O3B 2:ADP601 2.7 826.8 1.0
CB 2:ASN149 2.8 780.6 1.0
F3 2:AF3602 2.8 863.0 1.0
F2 2:AF3602 2.8 863.0 1.0
CA 2:ASN149 2.9 780.6 1.0
C 2:THR148 3.0 828.1 1.0
C 2:GLU37 3.1 848.7 1.0
N 2:ASN149 3.2 780.6 1.0
C 2:GLY36 3.2 870.9 1.0
N 2:ARG38 3.7 844.4 1.0
CA 2:GLU37 3.9 848.7 1.0
N 2:GLU37 3.9 848.7 1.0
CA 2:ARG38 4.0 844.4 1.0
PB 2:ADP601 4.1 826.8 1.0
CA 2:GLY36 4.2 870.9 1.0
CA 2:THR148 4.3 828.1 1.0
C 2:ASN149 4.3 780.6 1.0
N 2:GLY36 4.4 870.9 1.0
CB 2:THR40 4.5 812.0 1.0
O2B 2:ADP601 4.7 826.8 1.0
C 2:ARG38 4.7 844.4 1.0
O 2:ASN149 4.8 780.6 1.0
MG 2:MG603 4.8 827.2 1.0
N 2:GLY39 4.8 823.7 1.0
N 2:THR148 4.8 828.1 1.0
N 2:THR40 4.8 812.0 1.0
O1B 2:ADP601 4.8 826.8 1.0

Fluorine binding site 5 out of 15 in 9q97

Go back to Fluorine Binding Sites List in 9q97
Fluorine binding site 5 out of 15 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
2:F602

b:863.0
occ:1.00
 F2 2:AF3602 0.0 863.0 1.0
AL 2:AF3602 1.6 863.0 1.0
C 2:THR148 2.2 828.1 1.0
CA 2:THR148 2.5 828.1 1.0
N 2:ASN149 2.5 780.6 1.0
O 2:THR148 2.8 828.1 1.0
F3 2:AF3602 2.8 863.0 1.0
F1 2:AF3602 2.8 863.0 1.0
CA 2:ASN149 3.4 780.6 1.0
CB 2:ASN149 3.4 780.6 1.0
N 2:THR148 3.4 828.1 1.0
O3B 2:ADP601 3.7 826.8 1.0
CB 2:THR148 3.7 828.1 1.0
MG 2:MG603 3.7 827.2 1.0
O2B 2:ADP601 3.9 826.8 1.0
C 2:ALA147 4.1 805.5 1.0
O 2:ALA147 4.1 805.5 1.0
PB 2:ADP601 4.2 826.8 1.0
C 2:ASN149 4.8 780.6 1.0
O 2:GLY36 4.9 870.9 1.0
O1B 2:ADP601 4.9 826.8 1.0

Fluorine binding site 6 out of 15 in 9q97

Go back to Fluorine Binding Sites List in 9q97
Fluorine binding site 6 out of 15 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
2:F602

b:863.0
occ:1.00
 F3 2:AF3602 0.0 863.0 1.0
AL 2:AF3602 1.6 863.0 1.0
MG 2:MG603 2.4 827.2 1.0
O3B 2:ADP601 2.8 826.8 1.0
F2 2:AF3602 2.8 863.0 1.0
F1 2:AF3602 2.8 863.0 1.0
CA 2:ARG38 3.2 844.4 1.0
CB 2:ASN149 3.4 780.6 1.0
O2B 2:ADP601 3.4 826.8 1.0
N 2:GLY39 3.5 823.7 1.0
PB 2:ADP601 3.6 826.8 1.0
O 2:GLU37 3.7 848.7 1.0
C 2:ARG38 3.9 844.4 1.0
CB 2:ARG38 4.0 844.4 1.0
N 2:ARG38 4.0 844.4 1.0
C 2:GLU37 4.2 848.7 1.0
O3A 2:ADP601 4.3 826.8 1.0
CA 2:ASN149 4.4 780.6 1.0
N 2:ASN149 4.4 780.6 1.0
C 2:THR148 4.6 828.1 1.0
O2A 2:ADP601 4.6 826.8 1.0
O 2:THR148 4.7 828.1 1.0
CA 2:GLY39 4.7 823.7 1.0
N 2:THR40 4.9 812.0 1.0
O1B 2:ADP601 5.0 826.8 1.0

Fluorine binding site 7 out of 15 in 9q97

Go back to Fluorine Binding Sites List in 9q97
Fluorine binding site 7 out of 15 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
3:F602

b:756.9
occ:1.00
 F1 3:AF3602 0.0 756.9 1.0
AL 3:AF3602 1.6 756.9 1.0
MG 3:MG603 2.1 138.8 1.0
F3 3:AF3602 2.8 756.9 1.0
F2 3:AF3602 2.8 756.9 1.0
O3B 3:ADP601 2.9 695.2 1.0
CB 3:ASN149 3.9 676.0 1.0
PB 3:ADP601 4.1 695.2 1.0
O2B 3:ADP601 4.4 695.2 1.0
O1B 3:ADP601 4.8 695.2 1.0
N 3:GLY39 4.8 721.5 1.0
N 3:ASN149 4.9 676.0 1.0
CA 3:ASN149 4.9 676.0 1.0

Fluorine binding site 8 out of 15 in 9q97

Go back to Fluorine Binding Sites List in 9q97
Fluorine binding site 8 out of 15 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
3:F602

b:756.9
occ:1.00
 F2 3:AF3602 0.0 756.9 1.0
AL 3:AF3602 1.6 756.9 1.0
F3 3:AF3602 2.8 756.9 1.0
F1 3:AF3602 2.8 756.9 1.0
O3B 3:ADP601 2.8 695.2 1.0
MG 3:MG603 2.9 138.8 1.0
N 3:GLY39 2.9 721.5 1.0
CA 3:GLY39 3.4 721.5 1.0
C 3:ARG38 3.5 733.1 1.0
CA 3:ARG38 3.8 733.1 1.0
CB 3:ASN149 4.1 676.0 1.0
PB 3:ADP601 4.2 695.2 1.0
O 3:ARG38 4.4 733.1 1.0
N 3:ARG38 4.6 733.1 1.0
O1B 3:ADP601 4.7 695.2 1.0
CB 4:ASP164 4.9 172.6 1.0
O3A 3:ADP601 4.9 695.2 1.0
C 3:GLY39 4.9 721.5 1.0
CB 3:ARG38 4.9 733.1 1.0

Fluorine binding site 9 out of 15 in 9q97

Go back to Fluorine Binding Sites List in 9q97
Fluorine binding site 9 out of 15 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
3:F602

b:756.9
occ:1.00
 F3 3:AF3602 0.0 756.9 1.0
AL 3:AF3602 1.6 756.9 1.0
N 3:GLY39 2.7 721.5 1.0
O 3:GLY36 2.7 733.5 1.0
O3B 3:ADP601 2.7 695.2 1.0
F2 3:AF3602 2.8 756.9 1.0
F1 3:AF3602 2.8 756.9 1.0
C 3:GLY36 3.1 733.5 1.0
O1B 3:ADP601 3.1 695.2 1.0
N 3:ARG38 3.2 733.1 1.0
CB 3:ASN149 3.2 676.0 1.0
PB 3:ADP601 3.4 695.2 1.0
CA 3:GLY36 3.4 733.5 1.0
CA 3:ARG38 3.4 733.1 1.0
C 3:ARG38 3.5 733.1 1.0
MG 3:MG603 3.6 138.8 1.0
CA 3:GLY39 3.6 721.5 1.0
CA 3:ASN149 3.8 676.0 1.0
N 3:GLU37 3.9 726.7 1.0
C 3:GLU37 4.0 726.7 1.0
O2B 3:ADP601 4.3 695.2 1.0
N 3:ASN149 4.4 676.0 1.0
C 3:GLY39 4.5 721.5 1.0
CA 3:GLU37 4.6 726.7 1.0
N 3:THR40 4.6 705.7 1.0
N 3:GLY36 4.7 733.5 1.0
O3A 3:ADP601 4.7 695.2 1.0
O 3:ARG38 4.7 733.1 1.0
O 3:GLU37 4.8 726.7 1.0
CB 3:ARG38 4.9 733.1 1.0

Fluorine binding site 10 out of 15 in 9q97

Go back to Fluorine Binding Sites List in 9q97
Fluorine binding site 10 out of 15 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
5:F301

b:570.5
occ:1.00
 F1 5:AF3301 0.0 570.5 1.0
AL 5:AF3301 1.6 570.5 1.0
O1B 4:ADP601 2.7 292.4 1.0
F3 5:AF3301 2.8 570.5 1.0
F2 5:AF3301 2.8 570.5 1.0
O3B 4:ADP601 3.0 292.4 1.0
PB 4:ADP601 3.2 292.4 1.0
MG 4:MG602 3.5 91.0 1.0
O2B 4:ADP601 3.9 292.4 1.0
O3A 4:ADP601 4.6 292.4 1.0
N 4:GLY39 4.7 278.1 1.0

Reference:

F.Gao, F.Ye, M.Buck, X.Zhang. Subunit Specialisation in Aaa+ Proteins and Substrate Unfolding During Transcription Complex Remodelling To Be Published.
Page generated: Wed Jul 16 11:55:51 2025

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