Fluorine in PDB 9u6z: Interaction Between A Fluoroquinolone Derivative and Rnas with A Single Bulge

The binding sites of Fluorine atom in the Interaction Between A Fluoroquinolone Derivative and Rnas with A Single Bulge (pdb code 9u6z). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Interaction Between A Fluoroquinolone Derivative and Rnas with A Single Bulge, PDB code: 9u6z:

Fluorine binding site 1 out of 1 in the Interaction Between A Fluoroquinolone Derivative and Rnas with A Single Bulge


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Interaction Between A Fluoroquinolone Derivative and Rnas with A Single Bulge within 5.0Å range: probe atom residue distance (Å) B Occ A:F101 b:0.6 occ:1.00 F9 A:53D101 0.0 0.6 1.0 C9 A:53D101 1.4 0.5 1.0 H2' A:U4 2.1 0.5 1.0 H14 A:53D101 2.2 0.7 1.0 C8 A:53D101 2.4 0.5 1.0 C10 A:53D101 2.4 0.5 1.0 H10 A:53D101 2.6 0.5 1.0 N14 A:53D101 2.7 0.6 1.0 C2 A:U4 2.8 0.3 1.0 O2 A:U4 2.9 0.4 1.0 C2' A:U4 3.0 0.4 1.0 N1 A:U4 3.2 0.3 1.0 H192 A:53D101 3.2 1.4 1.0 N3 A:U4 3.4 0.4 1.0 C19 A:53D101 3.5 0.8 1.0 C1' A:U4 3.5 0.4 1.0 C3 A:53D101 3.6 0.5 1.0 C7 A:53D101 3.7 0.5 1.0 H3 A:U4 3.7 0.4 1.0 O2' A:U4 3.8 0.5 1.0 C8 A:G5 3.8 0.7 1.0 O4' A:G5 3.8 0.8 1.0 N9 A:G5 3.9 0.7 1.0 H1' A:U4 3.9 0.4 1.0 C6 A:U4 3.9 0.3 1.0 H8 A:G5 3.9 0.8 1.0 C15 A:53D101 4.0 0.5 1.0 H3' A:U4 4.1 0.5 1.0 HO2' A:U4 4.1 0.9 1.0 H5'' A:G5 4.1 1.3 1.0 N7 A:G5 4.1 0.6 1.0 C3' A:U4 4.2 0.4 1.0 C4 A:U4 4.2 0.4 1.0 H1' A:G5 4.2 0.7 1.0 C2 A:53D101 4.2 0.5 1.0 N1 A:A17 4.2 0.3 1.0 C1' A:G5 4.2 0.7 1.0 H2 A:A17 4.2 0.3 1.0 H191 A:53D101 4.2 1.1 1.0 H151 A:53D101 4.2 0.6 1.0 C4 A:G5 4.3 0.6 1.0 H152 A:53D101 4.3 0.9 1.0 H181 A:53D101 4.3 1.2 1.0 C5 A:U4 4.4 0.4 1.0 C5 A:G5 4.4 0.5 1.0 H7 A:53D101 4.5 0.6 1.0 C18 A:53D101 4.6 0.7 1.0 H6 A:U4 4.6 0.4 1.0 C2 A:A17 4.6 0.3 1.0 H61 A:A17 4.7 0.3 1.0 C4 A:53D101 4.8 0.5 1.0 O4' A:U4 4.8 0.4 1.0 O4 A:53D101 4.9 0.5 1.0 O3' A:U4 4.9 0.5 1.0 N3 A:G5 5.0 0.5 1.0

R.Ichijo, G.Kawai. Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of the Bulged Residues. J.Biochem. 2025.
ISSN: ISSN 0021-924X
PubMed: 40566752
DOI: 10.1093/JB/MVAF039