Chemical elements
  Fluorine
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    PDB 16pk-1c8m
      16pk
      1a08
      1a29
      1a2n
      1a3t
      1a50
      1a5s
      1a6e
      1a71
      1a9u
      1ad8
      1ae4
      1afq
      1agr
      1ah0
      1ah3
      1aid
      1amn
      1apv
      1apw
      1axe
      1axg
      1b02
      1b0e
      1b0f
      1b99
      1bcd
      1bjg
      1bl6
      1bl7
      1bm7
      1bma
      1bmk
      1br1
      1br2
      1br4
      1bs1
      1bs3
      1bvv
      1bw7
      1bwf
      1bx9
      1bzc
      1bzh
      1bzj
      1c0l
      1c22
      1c50
      1c5i
      1c8m
    PDB 1c9d-1eau
    PDB 1ec0-1grn
    PDB 1gs4-1j97
    PDB 1jdj-1mu8
    PDB 1mue-1oyt
    PDB 1oz1-1rby
    PDB 1rbz-1tu6
    PDB 1tuy-1w9i
    PDB 1w9j-1yw2
    PDB 1yw9-2ax8
    PDB 2ax9-2dqt
    PDB 2dqu-2ftk
    PDB 2fvd-2hhn
    PDB 2hiw-2izs
    PDB 2j51-2onh
    PDB 2oo8-2pow
    PDB 2pq9-2qzl
    PDB 2qzo-2vev
    PDB 2vew-2wf7
    PDB 2wf8-2xhd
    PDB 2xkk-3ar9
    PDB 3az8-3cej
    PDB 3cem-3dh3
    PDB 3dhf-3el7
    PDB 3el8-3fln
    PDB 3flq-3gc7
    PDB 3gc8-3h7w
    PDB 3h82-3i81
    PDB 3i8d-3jx1
    PDB 3jx2-3ktk
    PDB 3ktu-3lj6
    PDB 3lk9-3mqf
    PDB 3ms4-3nz7
    PDB 3o1g-3p4a
    PDB 3p4b-3ti1
    PDB 3tik-4acx
    PDB 4afe-4fk3
    PDB 4fod-7gch

Fluorine in the structure of Dethiobiotin Synthetase Complexed With Dethiobiotin, Adp , Inorganic Phosphate and Magnesium (pdb 1bs1)






The binding sites of Fluorine atom in the structure of Dethiobiotin Synthetase Complexed With Dethiobiotin, Adp , Inorganic Phosphate and Magnesium (pdb code 1bs1). This binding sites where shown with 5.0 Angstroms radius around Fluorine atom.
The 1bs1 structure was solved by H.KAECK, J.SANDMARK, K.J.GIBSON, G.SCHNEIDER, Y.LINDQVIST, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-1.8
Space groupC121
a (A)72.900
b (A)48.200
c (A)60.900
alpha (°)90.00
beta (°)107.00
gamma (°)90.00
Rfactor (%)17.2
Rfree (%)20.6


Fluorine Binding Sites:

Fluorine binding site 1 out of 3 in 1bs1


Fluorine binding site 1 out of 3 in 1bs1
Click to enlarge
stereopicture of Fluorine binding site 1 out of 3 in 1bs1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Fluorine in the PDB 1bs1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Fluorine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Thr11, A: Lys15, A: Thr16, A: Lys37, A: Asp54, A: Glu115, A: Gly116, A: Ala117, A: Gly118, A: Mg901, A: Mg902, A: Adp802, A: Daa850, A: Hoh444, A: Hoh717,

conact list:


AtomAtomDistance (A)
FOG1 A:Thr114.92
FCB A:Lys154.89
FCE A:Lys153.45
FCD A:Lys154.87
FNZ A:Lys153.42
FOG1 A:Thr164.18
FCE A:Lys374.57
FNZ A:Lys373.16
FOD2 A:Asp542.87
FOD1 A:Asp544.55
FCG A:Asp544.05
FOE2 A:Glu1153.11
FCD A:Glu1154.26
FO A:Gly1164.39
FCA A:Ala1174.83
FN A:Gly1184.39
FMG A:Mg9012.09
FMG A:Mg9023.34
FO3B A:Adp8023.19
FO1B A:Adp8024.34
FPB A:Adp8023.61
FO2B A:Adp8023.03
FAL A:Daa8501.60
FN2 A:Daa8504.79
FF2 A:Daa8502.58
FCN1 A:Daa8504.09
FO11 A:Daa8502.84
FCZ A:Daa8504.94
FF3 A:Daa8502.58
FF1 A:Daa8500.00
FO12 A:Daa8504.59
FO A:Hoh4443.42
FO A:Hoh7174.22

interactive model:


Fluorine binding site 2 out of 3 in 1bs1


Fluorine binding site 2 out of 3 in 1bs1
Click to enlarge
stereopicture of Fluorine binding site 2 out of 3 in 1bs1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Fluorine in the PDB 1bs1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Fluorine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Thr11, A: Glu12, A: Lys15, A: Lys37, A: Asp54, A: Gly118, A: Mg901, A: Mg902, A: Adp802, A: Daa850, A: Hoh444, A: Hoh717, A: Hoh754, A: Hoh832, A: Hoh833,

conact list:


AtomAtomDistance (A)
FCB A:Thr114.73
FOG1 A:Thr113.38
FOE1 A:Glu124.87
FNZ A:Lys154.84
FNZ A:Lys374.62
FOD2 A:Asp544.05
FCG A:Asp545.00
FN A:Gly1184.63
FMG A:Mg9014.09
FMG A:Mg9022.33
FO3B A:Adp8023.37
FPB A:Adp8024.61
FO2B A:Adp8024.69
FAL A:Daa8501.60
FN2 A:Daa8502.35
FF2 A:Daa8500.00
FCN1 A:Daa8503.24
FN1 A:Daa8503.56
FCE A:Daa8504.62
FCH A:Daa8503.11
FO11 A:Daa8502.62
FCS A:Daa8504.52
FCZ A:Daa8503.17
FF3 A:Daa8502.55
FF1 A:Daa8502.58
FO12 A:Daa8504.08
FO A:Hoh4443.81
FO A:Hoh7173.41
FO A:Hoh7543.16
FO A:Hoh8324.86
FO A:Hoh8333.80

interactive model:


Fluorine binding site 3 out of 3 in 1bs1


Fluorine binding site 3 out of 3 in 1bs1
Click to enlarge
stereopicture of Fluorine binding site 3 out of 3 in 1bs1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Fluorine in the PDB 1bs1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Fluorine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp10, A: Thr11, A: Glu12, A: Lys15, A: Ala117, A: Gly118, A: Mg901, A: Mg902, A: Adp802, A: Daa850, A: Hoh833,

conact list:


AtomAtomDistance (A)
FO A:Asp104.78
FN A:Thr114.70
FCB A:Thr113.50
FCG2 A:Thr114.97
FOG1 A:Thr112.81
FC A:Thr114.47
FCA A:Thr113.57
FN A:Glu124.29
FCE A:Lys153.55
FCD A:Lys154.93
FNZ A:Lys152.61
FC A:Ala1174.06
FCA A:Ala1174.54
FO A:Gly1183.96
FN A:Gly1182.84
FC A:Gly1184.00
FCA A:Gly1183.14
FMG A:Mg9014.48
FMG A:Mg9023.91
FO3B A:Adp8023.31
FO1B A:Adp8024.31
FPB A:Adp8024.15
FO2B A:Adp8024.52
FAL A:Daa8501.62
FN2 A:Daa8504.39
FCD A:Daa8504.81
FF2 A:Daa8502.55
FCN1 A:Daa8504.40
FN1 A:Daa8504.69
FCE A:Daa8504.75
FCH A:Daa8504.36
FO11 A:Daa8503.17
FCZ A:Daa8503.87
FF3 A:Daa8500.00
FF1 A:Daa8502.58
FO A:Hoh8334.82

interactive model:




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