Fluorine in PDB 1bvv: Sugar Ring Distortion in the Glycosyl-Enzyme Intermediate of A Family G/11 Xylanase

All present enzymatic activity of Sugar Ring Distortion in the Glycosyl-Enzyme Intermediate of A Family G/11 Xylanase:
3.2.1.8;

The structure of Sugar Ring Distortion in the Glycosyl-Enzyme Intermediate of A Family G/11 Xylanase, PDB code: 1bvv was solved by G.Sidhu, G.D.Brayer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.870, 52.790, 79.090, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / n/a

The binding sites of Fluorine atom in the Sugar Ring Distortion in the Glycosyl-Enzyme Intermediate of A Family G/11 Xylanase (pdb code 1bvv). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Sugar Ring Distortion in the Glycosyl-Enzyme Intermediate of A Family G/11 Xylanase, PDB code: 1bvv:

Fluorine binding site 1 out of 1 in the Sugar Ring Distortion in the Glycosyl-Enzyme Intermediate of A Family G/11 Xylanase


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Sugar Ring Distortion in the Glycosyl-Enzyme Intermediate of A Family G/11 Xylanase within 5.0Å range: probe atom residue distance (Å) B Occ A:F502 b:16.5 occ:1.00 F2 A:DFX502 0.0 16.5 1.0 C2 A:DFX502 1.4 17.3 1.0 C3 A:DFX502 2.4 17.7 1.0 C1 A:DFX502 2.4 16.2 1.0 OE1 A:GLU78 2.8 12.5 1.0 OE2 A:GLU78 2.9 13.8 1.0 O3 A:DFX502 2.9 15.3 1.0 CD A:GLU78 3.1 11.0 1.0 CZ A:PHE125 3.1 9.7 1.0 NE A:ARG112 3.2 31.2 1.0 CE2 A:PHE125 3.3 10.3 1.0 NE2 A:GLN127 3.5 13.7 1.0 O5 A:DFX502 3.7 18.6 1.0 CG A:ARG112 3.8 19.2 1.0 C4 A:DFX502 3.8 17.5 1.0 NH2 A:ARG112 4.0 34.4 1.0 CD A:ARG112 4.0 25.1 1.0 CZ A:ARG112 4.0 33.2 1.0 C5 A:DFX502 4.2 16.6 1.0 CD A:GLN127 4.4 13.0 1.0 O A:HOH218 4.4 30.0 1.0 CE1 A:PHE125 4.5 8.8 1.0 CG A:GLU78 4.5 10.4 1.0 O4 A:DFX502 4.6 17.2 1.0 O A:PRO116 4.6 12.8 1.0 CD2 A:PHE125 4.7 9.6 1.0 CB A:ARG112 4.7 19.3 1.0 CH2 A:TRP71 4.8 8.9 1.0 OH A:TYR80 4.8 11.4 1.0 CG A:GLN127 4.9 9.9 1.0 CZ2 A:TRP71 4.9 9.2 1.0 CB A:GLU78 4.9 8.8 1.0

G.Sidhu, S.G.Withers, N.T.Nguyen, L.P.Mcintosh, L.Ziser, G.D.Brayer. Sugar Ring Distortion in the Glycosyl-Enzyme Intermediate of A Family G/11 Xylanase. Biochemistry V. 38 5346 1999.
ISSN: ISSN 0006-2960
PubMed: 10220321
DOI: 10.1021/BI982946F