Atomistry » Fluorine » PDB 16pk-1bw7 » 1bw7
Atomistry »
  Fluorine »
    PDB 16pk-1bw7 »
      1bw7 »

Fluorine in PDB 1bw7: Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair (pdb code 1bw7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair, PDB code: 1bw7:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 1bw7

Go back to Fluorine Binding Sites List in 1bw7
Fluorine binding site 1 out of 2 in the Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F6

b:0.0
occ:1.00
F4 A:DFT6 0.0 0.0 1.0
C4 A:DFT6 1.3 0.0 1.0
C3 A:DFT6 2.3 0.0 1.0
C5 A:DFT6 2.4 0.0 1.0
H73 A:DFT6 2.6 0.0 1.0
H3 A:DFT6 2.6 0.0 1.0
C5M A:DFT6 3.0 0.0 1.0
H73 A:DT5 3.1 0.0 1.0
H61 B:DA7 3.4 0.0 1.0
C4 A:DT5 3.5 0.0 1.0
O4 A:DT5 3.5 0.0 1.0
C5 A:DT5 3.6 0.0 1.0
O6 A:DG7 3.6 0.0 1.0
C2 A:DFT6 3.6 0.0 1.0
H72 A:DFT6 3.6 0.0 1.0
C6 A:DFT6 3.7 0.0 1.0
H71 A:DFT6 3.8 0.0 1.0
C7 A:DT5 3.8 0.0 1.0
H41 B:DC6 4.0 0.0 1.0
C1 A:DFT6 4.1 0.0 1.0
N6 B:DA7 4.1 0.0 1.0
N3 A:DT5 4.2 0.0 1.0
C6 A:DT5 4.3 0.0 1.0
H71 A:DT5 4.3 0.0 1.0
C6 A:DG7 4.4 0.0 1.0
N7 A:DG7 4.5 0.0 1.0
H42 B:DC6 4.6 0.0 1.0
H6 A:DFT6 4.6 0.0 1.0
N4 B:DC6 4.6 0.0 1.0
H3 A:DT5 4.6 0.0 1.0
H62 B:DA7 4.6 0.0 1.0
H72 A:DT5 4.7 0.0 1.0
F2 A:DFT6 4.7 0.0 1.0
C5 A:DG7 4.7 0.0 1.0
N1 B:DA7 4.8 0.0 1.0
H6 A:DT5 4.8 0.0 1.0
N1 A:DT5 4.8 0.0 1.0
C2 A:DT5 4.8 0.0 1.0
C6 B:DA7 5.0 0.0 1.0

Fluorine binding site 2 out of 2 in 1bw7

Go back to Fluorine Binding Sites List in 1bw7
Fluorine binding site 2 out of 2 in the Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F6

b:0.0
occ:1.00
F2 A:DFT6 0.0 0.0 1.0
C2 A:DFT6 1.3 0.0 1.0
C3 A:DFT6 2.4 0.0 1.0
C1 A:DFT6 2.4 0.0 1.0
H1' A:DFT6 2.4 0.0 1.0
H3 A:DFT6 2.6 0.0 1.0
H2 B:DA7 2.6 0.0 1.0
C1' A:DFT6 2.8 0.0 1.0
H2 B:DA8 2.9 0.0 1.0
C2 B:DA8 3.2 0.0 1.0
N1 B:DA7 3.2 0.0 1.0
C2 B:DA7 3.3 0.0 1.0
H3 A:DT5 3.3 0.0 1.0
N1 B:DA8 3.5 0.0 1.0
C5 A:DG7 3.5 0.0 1.0
C4 A:DG7 3.5 0.0 1.0
N9 A:DG7 3.5 0.0 1.0
N7 A:DG7 3.6 0.0 1.0
C8 A:DG7 3.6 0.0 1.0
O4' A:DG7 3.6 0.0 1.0
C4 A:DFT6 3.6 0.0 1.0
C6 A:DFT6 3.7 0.0 1.0
H2'' A:DFT6 3.7 0.0 1.0
N3 A:DT5 3.8 0.0 1.0
C2' A:DFT6 3.9 0.0 1.0
N3 B:DA8 3.9 0.0 1.0
O4' A:DFT6 4.0 0.0 1.0
C6 A:DG7 4.1 0.0 1.0
O2 A:DT5 4.1 0.0 1.0
H8 A:DG7 4.1 0.0 1.0
C5 A:DFT6 4.2 0.0 1.0
C1' A:DG7 4.2 0.0 1.0
C2 A:DT5 4.2 0.0 1.0
N3 A:DG7 4.2 0.0 1.0
H61 B:DA7 4.3 0.0 1.0
H2' A:DFT6 4.4 0.0 1.0
C6 B:DA8 4.4 0.0 1.0
C6 B:DA7 4.5 0.0 1.0
H6 A:DFT6 4.5 0.0 1.0
N3 B:DA7 4.6 0.0 1.0
C4 A:DT5 4.6 0.0 1.0
O6 A:DG7 4.6 0.0 1.0
H5' A:DG7 4.6 0.0 1.0
N1 A:DG7 4.7 0.0 1.0
O4 A:DT5 4.7 0.0 1.0
F4 A:DFT6 4.7 0.0 1.0
C2 A:DG7 4.7 0.0 1.0
C4 B:DA8 4.7 0.0 1.0
H1' A:DG7 4.7 0.0 1.0
N6 B:DA7 4.8 0.0 1.0
H61 B:DA8 4.8 0.0 1.0
C4' A:DG7 4.9 0.0 1.0
C5 B:DA8 5.0 0.0 1.0

Reference:

K.M.Guckian, T.R.Krugh, E.T.Kool. Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair. Nat.Struct.Biol. V. 5 954 1998.
ISSN: ISSN 1072-8368
PubMed: 9808039
DOI: 10.1038/2930
Page generated: Sun Dec 13 11:28:28 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy