Fluorine in PDB 1bw7: Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair

The binding sites of Fluorine atom in the Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair (pdb code 1bw7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair, PDB code: 1bw7:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair within 5.0Å range: probe atom residue distance (Å) B Occ A:F6 b:0.0 occ:1.00 F4 A:DFT6 0.0 0.0 1.0 C4 A:DFT6 1.3 0.0 1.0 C3 A:DFT6 2.3 0.0 1.0 C5 A:DFT6 2.4 0.0 1.0 H73 A:DFT6 2.6 0.0 1.0 H3 A:DFT6 2.6 0.0 1.0 C5M A:DFT6 3.0 0.0 1.0 H73 A:DT5 3.1 0.0 1.0 H61 B:DA7 3.4 0.0 1.0 C4 A:DT5 3.5 0.0 1.0 O4 A:DT5 3.5 0.0 1.0 C5 A:DT5 3.6 0.0 1.0 O6 A:DG7 3.6 0.0 1.0 C2 A:DFT6 3.6 0.0 1.0 H72 A:DFT6 3.6 0.0 1.0 C6 A:DFT6 3.7 0.0 1.0 H71 A:DFT6 3.8 0.0 1.0 C7 A:DT5 3.8 0.0 1.0 H41 B:DC6 4.0 0.0 1.0 C1 A:DFT6 4.1 0.0 1.0 N6 B:DA7 4.1 0.0 1.0 N3 A:DT5 4.2 0.0 1.0 C6 A:DT5 4.3 0.0 1.0 H71 A:DT5 4.3 0.0 1.0 C6 A:DG7 4.4 0.0 1.0 N7 A:DG7 4.5 0.0 1.0 H42 B:DC6 4.6 0.0 1.0 H6 A:DFT6 4.6 0.0 1.0 N4 B:DC6 4.6 0.0 1.0 H3 A:DT5 4.6 0.0 1.0 H62 B:DA7 4.6 0.0 1.0 H72 A:DT5 4.7 0.0 1.0 F2 A:DFT6 4.7 0.0 1.0 C5 A:DG7 4.7 0.0 1.0 N1 B:DA7 4.8 0.0 1.0 H6 A:DT5 4.8 0.0 1.0 N1 A:DT5 4.8 0.0 1.0 C2 A:DT5 4.8 0.0 1.0 C6 B:DA7 5.0 0.0 1.0

Fluorine binding site 2 out of 2 in the Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair within 5.0Å range: probe atom residue distance (Å) B Occ A:F6 b:0.0 occ:1.00 F2 A:DFT6 0.0 0.0 1.0 C2 A:DFT6 1.3 0.0 1.0 C3 A:DFT6 2.4 0.0 1.0 C1 A:DFT6 2.4 0.0 1.0 H1' A:DFT6 2.4 0.0 1.0 H3 A:DFT6 2.6 0.0 1.0 H2 B:DA7 2.6 0.0 1.0 C1' A:DFT6 2.8 0.0 1.0 H2 B:DA8 2.9 0.0 1.0 C2 B:DA8 3.2 0.0 1.0 N1 B:DA7 3.2 0.0 1.0 C2 B:DA7 3.3 0.0 1.0 H3 A:DT5 3.3 0.0 1.0 N1 B:DA8 3.5 0.0 1.0 C5 A:DG7 3.5 0.0 1.0 C4 A:DG7 3.5 0.0 1.0 N9 A:DG7 3.5 0.0 1.0 N7 A:DG7 3.6 0.0 1.0 C8 A:DG7 3.6 0.0 1.0 O4' A:DG7 3.6 0.0 1.0 C4 A:DFT6 3.6 0.0 1.0 C6 A:DFT6 3.7 0.0 1.0 H2'' A:DFT6 3.7 0.0 1.0 N3 A:DT5 3.8 0.0 1.0 C2' A:DFT6 3.9 0.0 1.0 N3 B:DA8 3.9 0.0 1.0 O4' A:DFT6 4.0 0.0 1.0 C6 A:DG7 4.1 0.0 1.0 O2 A:DT5 4.1 0.0 1.0 H8 A:DG7 4.1 0.0 1.0 C5 A:DFT6 4.2 0.0 1.0 C1' A:DG7 4.2 0.0 1.0 C2 A:DT5 4.2 0.0 1.0 N3 A:DG7 4.2 0.0 1.0 H61 B:DA7 4.3 0.0 1.0 H2' A:DFT6 4.4 0.0 1.0 C6 B:DA8 4.4 0.0 1.0 C6 B:DA7 4.5 0.0 1.0 H6 A:DFT6 4.5 0.0 1.0 N3 B:DA7 4.6 0.0 1.0 C4 A:DT5 4.6 0.0 1.0 O6 A:DG7 4.6 0.0 1.0 H5' A:DG7 4.6 0.0 1.0 N1 A:DG7 4.7 0.0 1.0 O4 A:DT5 4.7 0.0 1.0 F4 A:DFT6 4.7 0.0 1.0 C2 A:DG7 4.7 0.0 1.0 C4 B:DA8 4.7 0.0 1.0 H1' A:DG7 4.7 0.0 1.0 N6 B:DA7 4.8 0.0 1.0 H61 B:DA8 4.8 0.0 1.0 C4' A:DG7 4.9 0.0 1.0 C5 B:DA8 5.0 0.0 1.0

K.M.Guckian, T.R.Krugh, E.T.Kool. Solution Structure of A Dna Duplex Containing A Replicable Difluorotoluene-Adenine Pair. Nat.Struct.Biol. V. 5 954 1998.
ISSN: ISSN 1072-8368
PubMed: 9808039
DOI: 10.1038/2930