Fluorine in PDB 1d1b: Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride.

The structure of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride., PDB code: 1d1b was solved by A.M.Gulick, C.B.Bauer, J.B.Thoden, E.Pate, R.G.Yount, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	103.880, 180.460, 54.070, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The structure of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride. also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride. (pdb code 1d1b). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride., PDB code: 1d1b:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride. within 5.0Å range: probe atom residue distance (Å) B Occ A:F999 b:23.4 occ:1.00 F1 A:DAQ999 0.0 23.4 1.0 BE A:DAQ999 1.5 9.0 1.0 F2 A:DAQ999 2.5 27.5 1.0 F3 A:DAQ999 2.5 21.5 1.0 OB3 A:DAQ999 2.6 17.9 1.0 O A:HOH1531 2.8 56.9 1.0 NZ A:LYS185 2.8 15.2 1.0 CA A:SER181 3.2 11.8 1.0 O A:HOH1526 3.2 79.9 1.0 CE A:LYS185 3.4 19.8 1.0 CB A:SER181 3.5 17.2 1.0 OG A:SER181 3.7 22.6 1.0 OG A:SER456 3.7 63.8 1.0 PB A:DAQ999 3.7 15.6 1.0 N A:SER181 3.8 13.6 1.0 OB1 A:DAQ999 3.9 10.0 1.0 O A:HOH1541 4.0 13.8 1.0 OB2 A:DAQ999 4.1 11.8 1.0 MG A:MG998 4.2 18.7 1.0 N A:GLY182 4.3 23.1 1.0 O A:GLU180 4.3 20.0 1.0 C A:SER181 4.3 28.3 1.0 C A:GLU180 4.3 13.5 1.0 O A:HOH1245 4.5 51.3 1.0 OG A:SER236 4.6 21.7 1.0 O A:HOH1123 4.6 33.7 1.0 O A:SER237 4.7 14.2 1.0 N A:SER237 4.8 15.8 1.0 O A:GLY179 4.8 13.5 1.0 CD A:LYS185 4.9 11.0 1.0

Fluorine binding site 2 out of 3 in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride. within 5.0Å range: probe atom residue distance (Å) B Occ A:F999 b:27.5 occ:1.00 F2 A:DAQ999 0.0 27.5 1.0 BE A:DAQ999 1.5 9.0 1.0 OG A:SER181 2.4 22.6 1.0 F3 A:DAQ999 2.4 21.5 1.0 OB3 A:DAQ999 2.4 17.9 1.0 F1 A:DAQ999 2.5 23.4 1.0 OG A:SER236 2.7 21.7 1.0 ND2 A:ASN233 3.2 27.9 1.0 CB A:SER181 3.2 17.2 1.0 CA A:SER181 3.5 11.8 1.0 CB A:SER236 3.5 18.1 1.0 CA A:SER236 3.5 15.8 1.0 O A:HOH1531 3.5 56.9 1.0 N A:SER237 3.7 15.8 1.0 N A:GLY182 3.7 23.1 1.0 CB A:ASN233 4.0 17.3 1.0 C A:SER181 4.0 28.3 1.0 PB A:DAQ999 4.0 15.6 1.0 CG A:ASN233 4.1 28.8 1.0 C A:SER236 4.1 13.6 1.0 O A:HOH1526 4.2 79.9 1.0 MG A:MG998 4.4 18.7 1.0 O A:HOH1061 4.4 23.1 1.0 OB2 A:DAQ999 4.5 11.8 1.0 O A:SER237 4.6 14.2 1.0 O A:HOH1540 4.6 16.0 1.0 N A:SER236 4.7 15.0 1.0 N A:SER181 4.7 13.6 1.0 CA A:GLY182 4.8 11.2 1.0 OA3 A:DAQ999 4.8 22.6 1.0 OB1 A:DAQ999 4.8 10.0 1.0 CA A:SER237 4.9 14.2 1.0 NZ A:LYS185 5.0 15.2 1.0 NH2 A:ARG238 5.0 21.0 1.0

Fluorine binding site 3 out of 3 in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O,P- Dinitrophenyl Aminopropyldiphosphate Beryllium Trifluoride. within 5.0Å range: probe atom residue distance (Å) B Occ A:F999 b:21.5 occ:1.00 F3 A:DAQ999 0.0 21.5 1.0 BE A:DAQ999 1.5 9.0 1.0 MG A:MG998 2.1 18.7 1.0 F2 A:DAQ999 2.4 27.5 1.0 OB3 A:DAQ999 2.5 17.9 1.0 F1 A:DAQ999 2.5 23.4 1.0 OG A:SER237 2.8 21.7 1.0 N A:SER237 2.8 15.8 1.0 OB2 A:DAQ999 2.9 11.8 1.0 O A:HOH1541 2.9 13.8 1.0 O A:HOH1540 3.1 16.0 1.0 CB A:SER237 3.2 16.1 1.0 PB A:DAQ999 3.3 15.6 1.0 O A:HOH1526 3.5 79.9 1.0 CA A:SER237 3.6 14.2 1.0 O A:SER237 3.8 14.2 1.0 C A:SER236 3.9 13.6 1.0 OG A:SER236 4.0 21.7 1.0 ND2 A:ASN233 4.0 27.9 1.0 CA A:SER236 4.1 15.8 1.0 OG1 A:THR186 4.1 25.4 1.0 O A:HOH1531 4.2 56.9 1.0 OB1 A:DAQ999 4.3 10.0 1.0 C A:SER237 4.3 11.4 1.0 NZ A:LYS185 4.5 15.2 1.0 OA3 A:DAQ999 4.5 22.6 1.0 CE A:LYS185 4.6 19.8 1.0 O A:HOH1245 4.7 51.3 1.0 O A:ASN235 4.7 24.0 1.0 CB A:SER236 4.7 18.1 1.0 OG A:SER181 4.8 22.6 1.0 OA2 A:DAQ999 4.8 16.0 1.0 O A:SER236 5.0 27.9 1.0

A.M.Gulick, C.B.Bauer, J.B.Thoden, E.Pate, R.G.Yount, I.Rayment. X-Ray Structures of the Dictyostelium Discoideum Myosin Motor Domain with Six Non-Nucleotide Analogs. J.Biol.Chem. V. 275 398 2000.
ISSN: ISSN 0021-9258
PubMed: 10617631
DOI: 10.1074/JBC.275.1.398