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Fluorine in PDB 1dxw: Structure of Hetero Complex of Non Structural Protein (Ns) of Hepatitis C Virus (Hcv) and Synthetic Peptidic Compound

Other elements in 1dxw:

The structure of Structure of Hetero Complex of Non Structural Protein (Ns) of Hepatitis C Virus (Hcv) and Synthetic Peptidic Compound also contains other interesting chemical elements:

Zinc (Zn) 20 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Hetero Complex of Non Structural Protein (Ns) of Hepatitis C Virus (Hcv) and Synthetic Peptidic Compound (pdb code 1dxw). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Structure of Hetero Complex of Non Structural Protein (Ns) of Hepatitis C Virus (Hcv) and Synthetic Peptidic Compound, PDB code: 1dxw:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 1dxw

Go back to Fluorine Binding Sites List in 1dxw
Fluorine binding site 1 out of 2 in the Structure of Hetero Complex of Non Structural Protein (Ns) of Hepatitis C Virus (Hcv) and Synthetic Peptidic Compound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Hetero Complex of Non Structural Protein (Ns) of Hepatitis C Virus (Hcv) and Synthetic Peptidic Compound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F188

b:0.0
occ:1.00
F1 A:2ZF188 0.0 0.0 1.0
CG2 A:2ZF188 1.4 0.0 1.0
HG1 A:2ZF188 2.0 0.0 1.0
HD3 A:LYS136 2.2 0.0 1.0
HA A:LYS136 2.2 0.0 1.0
HA2 A:2ZF188 2.3 0.0 1.0
F2 A:2ZF188 2.3 0.0 1.0
CB2 A:2ZF188 2.4 0.0 1.0
HZ1 A:LYS136 2.5 0.0 1.0
HZ3 A:LYS136 2.6 0.0 1.0
HB1 A:2ZF188 2.7 0.0 1.0
CA2 A:2ZF188 2.8 0.0 1.0
NZ A:LYS136 3.0 0.0 1.0
CD A:LYS136 3.2 0.0 1.0
CA A:LYS136 3.3 0.0 1.0
HB22 A:2ZF188 3.3 0.0 1.0
O A:LEU135 3.4 0.0 1.0
H A:GLY137 3.4 0.0 1.0
HG2 A:LYS136 3.5 0.0 1.0
O3 A:2ZF188 3.6 0.0 1.0
N A:LYS136 3.7 0.0 1.0
C A:LEU135 3.7 0.0 1.0
OE11 A:2ZF188 3.7 0.0 1.0
CG A:LYS136 3.8 0.0 1.0
CE A:LYS136 3.8 0.0 1.0
N2 A:2ZF188 3.8 0.0 1.0
HG21 A:VAL132 3.8 0.0 1.0
HZ2 A:LYS136 3.9 0.0 1.0
HD2 A:LYS136 4.0 0.0 1.0
C6 A:2ZF188 4.0 0.0 1.0
C5 A:2ZF188 4.0 0.0 1.0
CB A:LYS136 4.1 0.0 1.0
CD3 A:2ZF188 4.1 0.0 1.0
N A:GLY137 4.2 0.0 1.0
O A:VAL132 4.3 0.0 1.0
HB2 A:ALA157 4.3 0.0 1.0
C A:LYS136 4.3 0.0 1.0
HB2 A:LEU135 4.3 0.0 1.0
H A:LYS136 4.3 0.0 1.0
HE3 A:LYS136 4.4 0.0 1.0
HG A:SER138 4.4 0.0 1.0
HB3 A:LYS136 4.4 0.0 1.0
HE2 A:PHE154 4.5 0.0 1.0
H14 A:2ZF188 4.5 0.0 1.0
HE2 A:LYS136 4.5 0.0 1.0
OG A:SER139 4.6 0.0 1.0
HB3 A:LEU135 4.6 0.0 1.0
H A:SER138 4.7 0.0 1.0
O A:2ZF188 4.7 0.0 1.0
CG2 A:VAL132 4.7 0.0 1.0
HG3 A:LYS136 4.8 0.0 1.0
CB A:LEU135 4.8 0.0 1.0
CA A:LEU135 4.9 0.0 1.0
HG22 A:VAL132 4.9 0.0 1.0
HG23 A:VAL132 4.9 0.0 1.0
HB1 A:ALA157 4.9 0.0 1.0

Fluorine binding site 2 out of 2 in 1dxw

Go back to Fluorine Binding Sites List in 1dxw
Fluorine binding site 2 out of 2 in the Structure of Hetero Complex of Non Structural Protein (Ns) of Hepatitis C Virus (Hcv) and Synthetic Peptidic Compound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Hetero Complex of Non Structural Protein (Ns) of Hepatitis C Virus (Hcv) and Synthetic Peptidic Compound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F188

b:0.0
occ:1.00
F2 A:2ZF188 0.0 0.0 1.0
CG2 A:2ZF188 1.3 0.0 1.0
HG1 A:2ZF188 1.6 0.0 1.0
HB2 A:ALA157 2.2 0.0 1.0
F1 A:2ZF188 2.3 0.0 1.0
CB2 A:2ZF188 2.5 0.0 1.0
HB22 A:2ZF188 2.7 0.0 1.0
O A:2ZF188 2.8 0.0 1.0
HB1 A:ALA157 2.9 0.0 1.0
H A:ALA157 2.9 0.0 1.0
CB A:ALA157 3.0 0.0 1.0
CA2 A:2ZF188 3.3 0.0 1.0
HA2 A:2ZF188 3.3 0.0 1.0
HB1 A:2ZF188 3.3 0.0 1.0
HZ1 A:LYS136 3.3 0.0 1.0
HG21 A:VAL132 3.4 0.0 1.0
HZ3 A:LYS136 3.4 0.0 1.0
N2 A:2ZF188 3.4 0.0 1.0
O3 A:2ZF188 3.5 0.0 1.0
HG22 A:VAL132 3.5 0.0 1.0
C5 A:2ZF188 3.5 0.0 1.0
N A:ALA157 3.6 0.0 1.0
HE2 A:PHE154 3.7 0.0 1.0
HB3 A:ALA157 3.7 0.0 1.0
C4 A:2ZF188 3.8 0.0 1.0
NZ A:LYS136 3.8 0.0 1.0
CG2 A:VAL132 3.8 0.0 1.0
HB2 A:2ZF188 3.9 0.0 1.0
H14 A:2ZF188 3.9 0.0 1.0
CA A:ALA157 4.0 0.0 1.0
HZ A:PHE154 4.0 0.0 1.0
HB3 A:2ZF188 4.0 0.0 1.0
HA A:ALA156 4.0 0.0 1.0
HG23 A:VAL132 4.0 0.0 1.0
HB2 A:LEU135 4.1 0.0 1.0
HZ2 A:LYS136 4.2 0.0 1.0
HB3 A:LEU135 4.3 0.0 1.0
HD3 A:LYS136 4.3 0.0 1.0
CB A:2ZF188 4.3 0.0 1.0
HA A:LYS136 4.4 0.0 1.0
CE2 A:PHE154 4.4 0.0 1.0
O A:LEU135 4.4 0.0 1.0
CA1 A:2ZF188 4.5 0.0 1.0
N1 A:2ZF188 4.5 0.0 1.0
C A:ALA156 4.6 0.0 1.0
CZ A:PHE154 4.6 0.0 1.0
HA1 A:2ZF188 4.6 0.0 1.0
CA A:2ZF188 4.7 0.0 1.0
CB A:LEU135 4.7 0.0 1.0
HN2 A:2ZF188 4.7 0.0 1.0
HA A:ALA157 4.7 0.0 1.0
C6 A:2ZF188 4.7 0.0 1.0
O A:VAL132 4.8 0.0 1.0
HG A:SER138 4.8 0.0 1.0
CA A:ALA156 4.8 0.0 1.0
C A:LEU135 4.9 0.0 1.0
O A:ALA157 4.9 0.0 1.0
C A:ALA157 4.9 0.0 1.0

Reference:

G.Barbato, D.O.Cicero, F.Cordier, F.Narjes, B.Gerlach, S.Sambucini, S.Grzesiek, V.G.Matassa, R.Defrancesco, R.Bazzo. Inhibitor Binding Induces Active Site Stabilisation of the Hcv NS3 Protein Serine Protease Domain Embo J. V. 19 1195 2000.
ISSN: ISSN 0261-4189
PubMed: 10716920
DOI: 10.1093/EMBOJ/19.6.1195
Page generated: Sun Dec 13 11:29:05 2020

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