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Fluorine in PDB 1eat: Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones

Enzymatic activity of Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones

All present enzymatic activity of Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones:
3.4.21.36;

Protein crystallography data

The structure of Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones, PDB code: 1eat was solved by C.Ceccarelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.990, 57.790, 75.720, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / n/a

Other elements in 1eat:

The structure of Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones also contains other interesting chemical elements:

Sodium (Na) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones (pdb code 1eat). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones, PDB code: 1eat:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 1eat

Go back to Fluorine Binding Sites List in 1eat
Fluorine binding site 1 out of 3 in the Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:10.9
occ:1.00
F1 A:TFI1 0.0 10.9 1.0
C1 A:TFI1 1.3 10.0 1.0
F2 A:TFI1 2.1 7.1 1.0
F3 A:TFI1 2.1 7.8 1.0
C2 A:TFI1 2.4 10.2 1.0
NE2 A:HIS57 2.8 10.7 1.0
OG A:SER195 2.8 10.6 1.0
N1 A:TFI1 2.8 8.8 1.0
C3 A:TFI1 3.0 9.6 1.0
C7 A:TFI1 3.1 12.0 1.0
CD2 A:HIS57 3.2 7.9 1.0
C14 A:TFI1 3.5 17.1 1.0
O1 A:TFI1 3.5 10.3 1.0
C15 A:TFI1 3.6 17.5 1.0
O2 A:TFI1 3.6 10.2 1.0
CB A:SER195 3.7 8.4 1.0
C8 A:TFI1 3.9 11.5 1.0
CE1 A:HIS57 3.9 8.7 1.0
O A:HOH356 4.1 25.7 1.0
CG A:HIS57 4.5 10.5 1.0
C4 A:TFI1 4.5 8.4 1.0
C13 A:TFI1 4.6 16.7 1.0
C16 A:TFI1 4.6 19.4 1.0
ND1 A:HIS57 4.8 9.4 1.0
N2 A:TFI1 5.0 12.3 1.0

Fluorine binding site 2 out of 3 in 1eat

Go back to Fluorine Binding Sites List in 1eat
Fluorine binding site 2 out of 3 in the Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:7.1
occ:1.00
F2 A:TFI1 0.0 7.1 1.0
C1 A:TFI1 1.3 10.0 1.0
F1 A:TFI1 2.1 10.9 1.0
F3 A:TFI1 2.1 7.8 1.0
C2 A:TFI1 2.4 10.2 1.0
O1 A:TFI1 2.8 10.3 1.0
OG A:SER195 2.8 10.6 1.0
CB A:SER195 2.9 8.4 1.0
SG A:CYS42 3.5 9.3 1.0
NE2 A:HIS57 3.7 10.7 1.0
O A:THR41 3.7 5.1 1.0
O A:HOH356 3.7 25.7 1.0
C3 A:TFI1 3.7 9.6 1.0
CD2 A:HIS57 4.1 7.9 1.0
N A:GLY193 4.1 6.3 1.0
N1 A:TFI1 4.3 8.8 1.0
CA A:SER195 4.3 7.2 1.0
SG A:CYS58 4.4 8.0 1.0
O A:HOH306 4.4 44.3 1.0
N A:SER195 4.5 6.8 1.0
CA A:GLY193 4.6 6.5 1.0
C A:THR41 4.9 8.3 1.0
CE1 A:HIS57 4.9 8.7 1.0
C7 A:TFI1 5.0 12.0 1.0

Fluorine binding site 3 out of 3 in 1eat

Go back to Fluorine Binding Sites List in 1eat
Fluorine binding site 3 out of 3 in the Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5- Amino-Pyrimidin-6-One-Containing Trifluoromethylketones within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1

b:7.8
occ:1.00
F3 A:TFI1 0.0 7.8 1.0
C1 A:TFI1 1.3 10.0 1.0
F2 A:TFI1 2.1 7.1 1.0
F1 A:TFI1 2.1 10.9 1.0
C2 A:TFI1 2.4 10.2 1.0
O1 A:TFI1 2.8 10.3 1.0
C3 A:TFI1 3.0 9.6 1.0
CG A:GLN192 3.6 14.1 1.0
OG A:SER195 3.6 10.6 1.0
N A:GLY193 3.6 6.3 1.0
N1 A:TFI1 3.7 8.8 1.0
CA A:GLN192 3.8 9.4 1.0
CB A:GLN192 3.9 11.3 1.0
O2 A:TFI1 4.0 10.2 1.0
C7 A:TFI1 4.1 12.0 1.0
C A:GLN192 4.2 6.7 1.0
C4 A:TFI1 4.2 8.4 1.0
O A:HOH306 4.3 44.3 1.0
CB A:SER195 4.3 8.4 1.0
CA A:GLY193 4.7 6.5 1.0
O A:HOH356 4.7 25.7 1.0
CD A:GLN192 4.7 18.5 1.0
NE2 A:HIS57 4.8 10.7 1.0
NE2 A:GLN192 4.9 22.1 1.0
N A:GLN192 4.9 5.9 1.0
C14 A:TFI1 4.9 17.1 1.0
O A:THR41 5.0 5.1 1.0

Reference:

C.A.Veale, P.R.Bernstein, C.Bryant, C.Ceccarelli, J.R.Damewood Jr., R.Earley, S.W.Feeney, B.Gomes, B.J.Kosmider, G.B.Steelman, R.M.Thomas, E.P.Vacek, J.C.Williams, D.J.Wolanin, S.Woolson. Nonpeptidic Inhibitors of Human Leukocyte Elastase. 5. Design, Synthesis, and X-Ray Crystallography of A Series of Orally Active 5-Aminopyrimidin-6-One-Containing Trifluoromethyl Ketones. J.Med.Chem. V. 38 98 1995.
ISSN: ISSN 0022-2623
PubMed: 7837246
DOI: 10.1021/JM00001A015
Page generated: Wed Jul 31 11:10:16 2024

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