Fluorine in PDB 1eek: Solution Structure of A Nonpolar, Non Hydrogen Bonded Base Pair Surrogate in Dna.

The binding sites of Fluorine atom in the Solution Structure of A Nonpolar, Non Hydrogen Bonded Base Pair Surrogate in Dna. (pdb code 1eek). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Solution Structure of A Nonpolar, Non Hydrogen Bonded Base Pair Surrogate in Dna., PDB code: 1eek:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Solution Structure of A Nonpolar, Non Hydrogen Bonded Base Pair Surrogate in Dna.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Solution Structure of A Nonpolar, Non Hydrogen Bonded Base Pair Surrogate in Dna. within 5.0Å range: probe atom residue distance (Å) B Occ 1:F6 b:0.0 occ:1.00 F4 1:DFT6 0.0 0.0 1.0 C4 1:DFT6 1.3 0.0 1.0 C3 1:DFT6 2.4 0.0 1.0 C5 1:DFT6 2.4 0.0 1.0 H73 1:DFT6 2.5 0.0 1.0 H3 1:DFT6 2.7 0.0 1.0 C5M 1:DFT6 2.9 0.0 1.0 H12 2:MBZ7 2.9 0.0 1.0 H71 1:DFT6 3.2 0.0 1.0 O6 1:DG7 3.3 0.0 1.0 N3 1:DT5 3.4 0.0 1.0 C4 1:DT5 3.4 0.0 1.0 C6 1:DG7 3.4 0.0 1.0 C5 1:DT5 3.6 0.0 1.0 C2 1:DFT6 3.6 0.0 1.0 C6 1:DFT6 3.7 0.0 1.0 H3 1:DT5 3.7 0.0 1.0 C2 1:DT5 3.7 0.0 1.0 C5 1:DG7 3.8 0.0 1.0 H72 1:DFT6 3.8 0.0 1.0 O4 1:DT5 3.9 0.0 1.0 C6 1:DT5 3.9 0.0 1.0 C12 2:MBZ7 4.0 0.0 1.0 N1 1:DT5 4.0 0.0 1.0 H41 2:DC6 4.0 0.0 1.0 N1 1:DG7 4.1 0.0 1.0 H72 2:MBZ7 4.1 0.0 1.0 N7 1:DG7 4.1 0.0 1.0 H72 1:DT5 4.1 0.0 1.0 C1 1:DFT6 4.2 0.0 1.0 H1 1:DG7 4.4 0.0 1.0 C7 1:DT5 4.4 0.0 1.0 O2 1:DT5 4.4 0.0 1.0 H71 2:MBZ7 4.5 0.0 1.0 H6 1:DFT6 4.5 0.0 1.0 H73 1:DT5 4.6 0.0 1.0 N4 2:DC6 4.6 0.0 1.0 C4 1:DG7 4.6 0.0 1.0 H6 1:DT5 4.6 0.0 1.0 C5M 2:MBZ7 4.6 0.0 1.0 H11 2:MBZ7 4.7 0.0 1.0 F2 1:DFT6 4.7 0.0 1.0 C6 2:MBZ7 4.8 0.0 1.0 C11 2:MBZ7 4.8 0.0 1.0 C2 1:DG7 4.9 0.0 1.0 C8 1:DG7 5.0 0.0 1.0 H42 2:DC6 5.0 0.0 1.0

Fluorine binding site 2 out of 2 in the Solution Structure of A Nonpolar, Non Hydrogen Bonded Base Pair Surrogate in Dna.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Solution Structure of A Nonpolar, Non Hydrogen Bonded Base Pair Surrogate in Dna. within 5.0Å range: probe atom residue distance (Å) B Occ 1:F6 b:0.0 occ:1.00 F2 1:DFT6 0.0 0.0 1.0 C2 1:DFT6 1.3 0.0 1.0 C3 1:DFT6 2.4 0.0 1.0 C1 1:DFT6 2.4 0.0 1.0 H1' 1:DFT6 2.5 0.0 1.0 H3 1:DFT6 2.6 0.0 1.0 C1' 1:DFT6 2.9 0.0 1.0 O4' 1:DG7 3.1 0.0 1.0 H2 2:DA8 3.5 0.0 1.0 O4' 1:DFT6 3.5 0.0 1.0 C4 1:DFT6 3.6 0.0 1.0 C6 1:DFT6 3.7 0.0 1.0 N9 1:DG7 3.7 0.0 1.0 H11 2:MBZ7 3.7 0.0 1.0 O2 1:DT5 3.7 0.0 1.0 C1' 1:DG7 3.8 0.0 1.0 C4 1:DG7 3.9 0.0 1.0 H1' 1:DG7 4.0 0.0 1.0 H5' 1:DG7 4.1 0.0 1.0 C5 1:DFT6 4.2 0.0 1.0 C2 2:DA8 4.2 0.0 1.0 H4' 1:DG7 4.2 0.0 1.0 C4' 1:DG7 4.2 0.0 1.0 N3 1:DG7 4.2 0.0 1.0 C2' 1:DFT6 4.2 0.0 1.0 C8 1:DG7 4.3 0.0 1.0 H2'' 1:DFT6 4.4 0.0 1.0 C2 1:DT5 4.5 0.0 1.0 C5 1:DG7 4.5 0.0 1.0 H6 1:DFT6 4.5 0.0 1.0 H3 1:DT5 4.6 0.0 1.0 N3 2:DA8 4.6 0.0 1.0 C5' 1:DG7 4.7 0.0 1.0 H12 2:MBZ7 4.7 0.0 1.0 N7 1:DG7 4.7 0.0 1.0 F4 1:DFT6 4.7 0.0 1.0 H8 1:DG7 4.7 0.0 1.0 C11 2:MBZ7 4.7 0.0 1.0 C4' 1:DFT6 4.8 0.0 1.0 H2' 1:DFT6 4.8 0.0 1.0 N3 1:DT5 4.9 0.0 1.0

K.M.Guckian, T.R.Krugh, E.T.Kool. Solution Structure of A Nonpolar, Non-Hydrogen-Bonded Base Pair Surrogate in Dna J.Am.Chem.Soc. V. 122 6841 2000.
ISSN: ISSN 0002-7863