Atomistry » Fluorine » PDB 1dvz-1fk9 » 1exx
Atomistry »
  Fluorine »
    PDB 1dvz-1fk9 »
      1exx »

Fluorine in PDB 1exx: Enantiomer Discrimination Illustrated By Crystal Structures of the Human Retinoic Acid Receptor Hrargamma Ligand Binding Domain: the Complex with the Inactive S-Enantiomer BMS270395.

Protein crystallography data

The structure of Enantiomer Discrimination Illustrated By Crystal Structures of the Human Retinoic Acid Receptor Hrargamma Ligand Binding Domain: the Complex with the Inactive S-Enantiomer BMS270395., PDB code: 1exx was solved by B.P.Klaholz, A.Mitschler, M.Belema, C.Zusi, D.Moras, Structural Proteomicsin Europe (Spine), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 1.67
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 59.849, 59.849, 155.615, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 24.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Enantiomer Discrimination Illustrated By Crystal Structures of the Human Retinoic Acid Receptor Hrargamma Ligand Binding Domain: the Complex with the Inactive S-Enantiomer BMS270395. (pdb code 1exx). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Enantiomer Discrimination Illustrated By Crystal Structures of the Human Retinoic Acid Receptor Hrargamma Ligand Binding Domain: the Complex with the Inactive S-Enantiomer BMS270395., PDB code: 1exx:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 1exx

Go back to Fluorine Binding Sites List in 1exx
Fluorine binding site 1 out of 2 in the Enantiomer Discrimination Illustrated By Crystal Structures of the Human Retinoic Acid Receptor Hrargamma Ligand Binding Domain: the Complex with the Inactive S-Enantiomer BMS270395.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Enantiomer Discrimination Illustrated By Crystal Structures of the Human Retinoic Acid Receptor Hrargamma Ligand Binding Domain: the Complex with the Inactive S-Enantiomer BMS270395. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F450

b:12.3
occ:0.40
F1 A:961450 0.0 12.3 0.4
C5 A:961450 1.3 18.4 0.6
C1 A:961450 1.3 18.0 0.4
C6 A:961450 2.3 15.7 1.0
C4 A:961450 2.3 18.4 0.6
C2 A:961450 2.3 18.1 0.4
O A:LEU271 2.4 13.2 1.0
N6 A:961450 2.7 12.2 1.0
N A:ILE275 3.0 15.1 1.0
C A:LEU271 3.2 12.4 1.0
CB A:ILE275 3.3 20.2 1.0
CA A:LEU271 3.5 14.9 1.0
CB A:ARG274 3.5 11.9 1.0
C1 A:961450 3.6 15.7 0.6
C5 A:961450 3.6 15.5 0.4
C3 A:961450 3.6 16.7 1.0
CA A:ILE275 3.6 15.9 1.0
CG2 A:ILE275 3.8 15.2 1.0
CB A:LEU271 3.8 12.9 1.0
C A:ARG274 3.9 14.0 1.0
CD2 A:LEU271 3.9 15.4 1.0
C23 A:961450 3.9 15.5 1.0
C4 A:961450 4.1 14.3 0.4
C2 A:961450 4.1 13.2 0.6
O22 A:961450 4.1 15.7 1.0
CA A:ARG274 4.1 12.6 1.0
CG1 A:ILE275 4.4 18.6 1.0
N A:MET272 4.4 12.3 1.0
CG A:LEU271 4.5 14.4 1.0
N A:ARG274 4.5 13.3 1.0
SG A:CYS237 4.6 16.4 1.0
C22 A:961450 4.6 14.9 1.0
F1 A:961450 4.6 18.7 0.6
O23 A:961450 4.7 17.1 1.0
CD1 A:ILE275 4.7 18.5 1.0
CG A:ARG274 4.8 18.8 1.0
C7 A:961450 4.8 20.8 1.0
O A:ILE270 4.8 14.2 1.0
O A:ARG274 4.8 15.2 1.0
N A:LEU271 4.8 14.3 1.0
O71 A:961450 4.9 23.0 1.0
CA A:MET272 5.0 15.3 1.0
CD A:ARG274 5.0 16.3 1.0

Fluorine binding site 2 out of 2 in 1exx

Go back to Fluorine Binding Sites List in 1exx
Fluorine binding site 2 out of 2 in the Enantiomer Discrimination Illustrated By Crystal Structures of the Human Retinoic Acid Receptor Hrargamma Ligand Binding Domain: the Complex with the Inactive S-Enantiomer BMS270395.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Enantiomer Discrimination Illustrated By Crystal Structures of the Human Retinoic Acid Receptor Hrargamma Ligand Binding Domain: the Complex with the Inactive S-Enantiomer BMS270395. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F450

b:18.7
occ:0.60
F1 A:961450 0.0 18.7 0.6
C5 A:961450 1.3 15.5 0.4
C1 A:961450 1.3 15.7 0.6
C4 A:961450 2.3 14.3 0.4
C6 A:961450 2.3 15.7 1.0
C2 A:961450 2.3 13.2 0.6
O23 A:961450 2.5 17.1 1.0
N6 A:961450 2.8 12.2 1.0
C23 A:961450 2.9 15.5 1.0
CE1 A:PHE230 3.1 16.2 1.0
CB A:ALA234 3.2 14.3 1.0
CA A:ALA234 3.3 15.7 1.0
N A:ALA234 3.5 14.3 1.0
C1 A:961450 3.6 18.0 0.4
C5 A:961450 3.6 18.4 0.6
C3 A:961450 3.6 16.7 1.0
CZ A:PHE230 3.6 16.9 1.0
CD1 A:PHE230 3.8 15.0 1.0
CE2 A:PHE288 3.9 17.9 1.0
C2 A:961450 4.1 18.1 0.4
O A:PHE230 4.1 15.3 1.0
C4 A:961450 4.1 18.4 0.6
C A:LEU233 4.3 14.9 1.0
CD2 A:PHE288 4.3 16.6 1.0
C22 A:961450 4.4 14.9 1.0
O A:LEU233 4.6 15.1 1.0
F1 A:961450 4.6 12.3 0.4
CE2 A:PHE230 4.7 17.8 1.0
C A:ALA234 4.7 18.1 1.0
CG A:PHE230 4.7 14.6 1.0
C7 A:961450 4.8 20.8 1.0
C9 A:961450 4.9 13.2 1.0
CB A:LEU233 4.9 18.8 1.0

Reference:

B.P.Klaholz, A.Mitschler, M.Belema, C.Zusi, D.Moras. Enantiomer Discrimination Illustrated By High-Resolution Crystal Structures of the Human Nuclear Receptor Hrargamma. Proc.Natl.Acad.Sci.Usa V. 97 6322 2000.
ISSN: ISSN 0027-8424
PubMed: 10841540
DOI: 10.1073/PNAS.97.12.6322
Page generated: Wed Jul 31 11:15:09 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy