Fluorine in PDB 1g9r: Crystal Structure of Galactosyltransferase Lgtc in Complex with Mn and Udp-2F-Galactose

The structure of Crystal Structure of Galactosyltransferase Lgtc in Complex with Mn and Udp-2F-Galactose, PDB code: 1g9r was solved by K.Persson, D.L.Hoa, M.Diekelmann, W.W.Wakarchuk, S.G.Withers, N.C.J.Strynadka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.93 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.790, 76.050, 86.840, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 22.5

The structure of Crystal Structure of Galactosyltransferase Lgtc in Complex with Mn and Udp-2F-Galactose also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

The binding sites of Fluorine atom in the Crystal Structure of Galactosyltransferase Lgtc in Complex with Mn and Udp-2F-Galactose (pdb code 1g9r). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Galactosyltransferase Lgtc in Complex with Mn and Udp-2F-Galactose, PDB code: 1g9r:

Fluorine binding site 1 out of 1 in the Crystal Structure of Galactosyltransferase Lgtc in Complex with Mn and Udp-2F-Galactose


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Galactosyltransferase Lgtc in Complex with Mn and Udp-2F-Galactose within 5.0Å range: probe atom residue distance (Å) B Occ A:F401 b:18.9 occ:1.00 F2' A:UPF401 0.0 18.9 1.0 C2' A:UPF401 1.4 14.3 1.0 C3' A:UPF401 2.5 15.0 1.0 C1' A:UPF401 2.5 16.9 1.0 O3' A:UPF401 2.9 13.6 1.0 O1B A:UPF401 2.9 10.5 1.0 O3B A:UPF401 3.1 14.1 1.0 CE1 A:HIS244 3.1 7.2 1.0 OD1 A:ASP103 3.3 3.1 1.0 OD1 A:ASN153 3.3 5.4 1.0 ND2 A:ASN153 3.3 7.1 1.0 PB A:UPF401 3.6 12.4 1.0 NE2 A:HIS244 3.6 4.5 1.0 CG A:ASN153 3.7 6.0 1.0 O5' A:UPF401 3.7 15.8 1.0 MN A:MN400 3.7 4.9 1.0 SG A:CYS246 3.7 15.8 1.0 N A:GLY155 3.7 5.5 1.0 OE1 A:GLN189 3.8 6.9 1.0 C4' A:UPF401 3.8 14.3 1.0 CA A:GLY155 4.0 3.8 1.0 C5' A:UPF401 4.1 13.9 1.0 ND1 A:HIS244 4.3 4.3 1.0 O4' A:UPF401 4.3 10.8 1.0 O3A A:UPF401 4.3 10.0 1.0 CG A:ASP103 4.4 2.0 1.0 C A:ALA154 4.5 5.8 1.0 N A:ALA154 4.6 4.9 1.0 CB A:CYS246 4.6 9.6 1.0 O2B A:UPF401 4.8 13.6 1.0 CD A:GLN189 4.9 7.4 1.0 OD2 A:ASP103 4.9 3.4 1.0 CD2 A:HIS244 5.0 4.6 1.0 CA A:ALA154 5.0 6.2 1.0

K.Persson, H.D.Ly, M.Dieckelmann, W.W.Wakarchuk, S.G.Withers, N.C.Strynadka. Crystal Structure of the Retaining Galactosyltransferase Lgtc From Neisseria Meningitidis in Complex with Donor and Acceptor Sugar Analogs. Nat.Struct.Biol. V. 8 166 2001.
ISSN: ISSN 1072-8368
PubMed: 11175908
DOI: 10.1038/84168