Fluorine in PDB 1ga8: Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs.

Enzymatic activity of Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs.

All present enzymatic activity of Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs.:
2.4.1.44;

Protein crystallography data

The structure of Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs., PDB code: 1ga8 was solved by K.Persson, H.D.Ly, M.Diekelmann, W.W.Wakarchuk, S.G.Withers, N.C.J.Strynadka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	24.38 / 2.00
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	39.975, 76.158, 87.228, 90.00, 90.00, 90.00
*R / R_free (%)*	18.9 / 22.6

Other elements in 1ga8:

The structure of Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs. also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs. (pdb code 1ga8). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs., PDB code: 1ga8:

Fluorine binding site 1 out of 1 in 1ga8

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Fluorine Binding Sites List in 1ga8

Fluorine binding site 1 out of 1 in the Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs.

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F501 b:29.9 occ:1.00	F2'	A:UPF501	0.0	29.9	1.0
	C2'	A:UPF501	1.4	25.4	1.0
	C1'	A:UPF501	2.4	24.0	1.0
	C3'	A:UPF501	2.5	25.6	1.0
	O1B	A:UPF501	2.8	9.8	1.0
	O3'	A:UPF501	2.9	24.3	1.0
	O3B	A:UPF501	3.1	15.0	1.0
	ND2	A:ASN153	3.1	9.5	1.0
	CE1	A:HIS244	3.1	8.1	1.0
	OD1	A:ASN153	3.3	10.6	1.0
	OD1	A:ASP103	3.4	7.5	1.0
	PB	A:UPF501	3.5	11.3	1.0
	CG	A:ASN153	3.6	8.8	1.0
	NE2	A:HIS244	3.6	6.8	1.0
	O5'	A:UPF501	3.7	24.9	1.0
	OE1	A:GLN189	3.7	8.8	1.0
	MN	A:MN400	3.7	11.3	1.0
	C4'	A:UPF501	3.8	24.6	1.0
	N	A:GLY155	3.9	6.5	1.0
	CB	A:CYS246	4.1	16.4	1.0
	C5'	A:UPF501	4.2	20.8	1.0
	CA	A:GLY155	4.2	7.7	1.0
	ND1	A:HIS244	4.2	5.4	1.0
	O3A	A:UPF501	4.3	10.5	1.0
	O4'	A:UPF501	4.4	24.4	1.0
	CG	A:ASP103	4.5	8.2	1.0
	N	A:ALA154	4.5	7.4	1.0
	C	A:ALA154	4.6	8.3	1.0
	O2B	A:UPF501	4.8	12.8	1.0
	CD	A:GLN189	4.8	8.7	1.0
	C4	A:DEL500	4.9	16.5	1.0
	CD2	A:HIS244	4.9	5.6	1.0
	CB	A:ASN153	5.0	8.9	1.0

Reference:

K.Persson, H.D.Ly, M.Dieckelmann, W.W.Wakarchuk, S.G.Withers, N.C.Strynadka. Crystal Structure of the Retaining Galactosyltransferase Lgtc From Neisseria Meningitidis in Complex with Donor and Acceptor Sugar Analogs. Nat.Struct.Biol. V. 8 166 2001.
ISSN: ISSN 1072-8368
PubMed: 11175908
DOI: 10.1038/84168

Page generated: Wed Jul 31 11:24:52 2024

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