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Fluorine in PDB 1gyy: The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity

Enzymatic activity of The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity

All present enzymatic activity of The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity:
5.3.2.1;

Protein crystallography data

The structure of The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity, PDB code: 1gyy was solved by J.Almrud, A.Kern, S.Wang, R.Czerwinski, W.Johnson, A.Murzin, M.Hackert, C.Whitman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.700, 46.700, 76.200, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 17.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity (pdb code 1gyy). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity, PDB code: 1gyy:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 1gyy

Go back to Fluorine Binding Sites List in 1gyy
Fluorine binding site 1 out of 2 in the The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F500

b:19.1
occ:1.00
 F1 A:FHC500 0.0 19.1 1.0
C8 A:FHC500 1.4 18.1 1.0
C7 A:FHC500 2.3 19.1 1.0
C9 A:FHC500 2.4 17.2 1.0
O3 A:FHC500 2.8 16.2 1.0
CZ3 B:TRP51 3.0 6.6 1.0
CH2 B:TRP51 3.1 6.6 1.0
N B:PHE8 3.1 7.7 1.0
CD1 B:PHE8 3.1 15.0 1.0
CA B:CYS7 3.3 6.2 1.0
C B:CYS7 3.4 7.0 1.0
CE3 B:TRP51 3.4 6.2 1.0
CE1 B:PHE8 3.5 16.4 1.0
O2 A:FHC500 3.5 17.1 1.0
CZ2 B:TRP51 3.5 5.8 1.0
CG B:PHE8 3.7 12.9 1.0
C1 A:FHC500 3.7 19.8 1.0
CD2 B:TRP51 3.8 5.6 1.0
CE2 B:TRP51 3.8 5.1 1.0
CA B:PHE8 4.0 8.6 1.0
CA A:PRO1 4.1 4.7 1.0
O B:LYS6 4.1 5.2 1.0
N B:CYS7 4.2 5.0 1.0
CB B:PHE8 4.2 10.2 1.0
N A:PRO1 4.2 5.5 1.0
CZ B:PHE8 4.3 17.1 1.0
CB B:CYS7 4.3 6.6 1.0
O B:CYS7 4.3 7.0 1.0
C6 A:FHC500 4.5 20.1 1.0
CD2 B:PHE8 4.5 15.0 1.0
C B:LYS6 4.5 4.7 1.0
CE2 B:PHE8 4.7 16.5 1.0
C2 A:FHC500 4.8 20.0 1.0
NE1 B:TRP51 4.8 5.8 1.0
CG B:TRP51 4.9 5.9 1.0
CB A:PRO1 5.0 7.0 1.0

Fluorine binding site 2 out of 2 in 1gyy

Go back to Fluorine Binding Sites List in 1gyy
Fluorine binding site 2 out of 2 in the The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F500

b:17.5
occ:1.00
 F1 B:FHC500 0.0 17.5 1.0
C8 B:FHC500 1.4 16.9 1.0
C7 B:FHC500 2.3 16.3 1.0
C9 B:FHC500 2.4 16.6 1.0
O2 B:FHC500 2.9 17.1 1.0
N A:PHE8 3.0 5.9 1.0
CZ3 A:TRP51 3.0 4.6 1.0
CH2 A:TRP51 3.1 4.3 1.0
CD1 A:PHE8 3.1 11.1 1.0
CA A:CYS7 3.2 4.3 1.0
C A:CYS7 3.3 4.9 1.0
CE1 A:PHE8 3.4 11.5 1.0
O3 B:FHC500 3.4 17.8 1.0
CE3 A:TRP51 3.5 4.0 1.0
CZ2 A:TRP51 3.5 3.9 1.0
CG A:PHE8 3.7 10.3 1.0
C1 B:FHC500 3.7 15.9 1.0
CD2 A:TRP51 3.9 3.7 1.0
CE2 A:TRP51 3.9 3.0 1.0
CA B:PRO1 4.0 3.6 1.0
O A:LYS6 4.0 4.0 1.0
CA A:PHE8 4.1 7.5 1.0
N A:CYS7 4.1 3.5 1.0
N B:PRO1 4.1 5.1 1.0
CB A:CYS7 4.2 5.3 1.0
CB A:PHE8 4.2 9.2 1.0
CZ A:PHE8 4.3 12.6 1.0
O A:CYS7 4.3 4.4 1.0
C A:LYS6 4.4 3.5 1.0
C6 B:FHC500 4.4 15.9 1.0
CD2 A:PHE8 4.5 12.0 1.0
CE2 A:PHE8 4.7 12.7 1.0
C2 B:FHC500 4.7 16.1 1.0
CB B:PRO1 4.9 5.1 1.0
NE1 A:TRP51 4.9 3.9 1.0
CG A:TRP51 4.9 3.8 1.0
C B:PRO1 4.9 4.2 1.0

Reference:

J.Almrud, A.Kern, S.Wang, R.Czerwinski, W.Johnson, A.Murzin, M.Hackert, C.Whitman. The Crystal Structure of Ydce, A 4-Oxalocrotonate Tautomerase Homologue From Escherichia Coli, Confirms the Structural Basis For Oligomer Diversity Biochemistry V. 41 12010 2002.
ISSN: ISSN 0006-2960
PubMed: 12356301
DOI: 10.1021/BI020271H
Page generated: Wed Jul 31 11:27:50 2024

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