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Fluorine in PDB 1h6m: Covalent Glycosyl-Enzyme Intermediate of Hen Egg White Lysozyme

Enzymatic activity of Covalent Glycosyl-Enzyme Intermediate of Hen Egg White Lysozyme

All present enzymatic activity of Covalent Glycosyl-Enzyme Intermediate of Hen Egg White Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Covalent Glycosyl-Enzyme Intermediate of Hen Egg White Lysozyme, PDB code: 1h6m was solved by D.J.Vocadlo, G.J.Davies, R.Laine, S.G.Withers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.00 / 1.64
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.632, 78.632, 36.700, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 22.2

Other elements in 1h6m:

The structure of Covalent Glycosyl-Enzyme Intermediate of Hen Egg White Lysozyme also contains other interesting chemical elements:

Sodium (Na) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Covalent Glycosyl-Enzyme Intermediate of Hen Egg White Lysozyme (pdb code 1h6m). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Covalent Glycosyl-Enzyme Intermediate of Hen Egg White Lysozyme, PDB code: 1h6m:

Fluorine binding site 1 out of 1 in 1h6m

Go back to Fluorine Binding Sites List in 1h6m
Fluorine binding site 1 out of 1 in the Covalent Glycosyl-Enzyme Intermediate of Hen Egg White Lysozyme


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Covalent Glycosyl-Enzyme Intermediate of Hen Egg White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1131

b:21.6
occ:0.70
F2 A:G2F1131 0.0 21.6 0.7
C2 A:G2F1131 1.4 18.9 0.7
ND2 A:ASN46 1.9 15.8 0.3
CG A:ASN46 2.3 16.8 0.3
C1 A:G2F1131 2.4 19.5 0.7
C3 A:G2F1131 2.4 17.5 0.7
OD1 A:ASN46 2.5 15.8 0.3
OD2 A:ASP52 2.7 20.9 1.0
OD1 A:ASP52 2.7 20.1 1.0
CG A:ASP52 2.8 18.0 1.0
O3 A:G2F1131 2.9 20.6 0.7
O A:HOH2100 3.1 33.3 1.0
ND2 A:ASN46 3.2 19.9 0.3
O A:HOH2038 3.5 39.7 1.0
CB A:ASN46 3.6 19.3 1.0
O5 A:G2F1131 3.6 15.9 0.7
C4 A:G2F1131 3.8 15.9 0.7
CG A:ASN46 3.9 19.7 0.3
ND2 A:ASN59 3.9 23.1 1.0
CB A:ASP52 4.1 11.4 1.0
O A:HOH2102 4.1 49.2 1.0
C5 A:G2F1131 4.1 15.4 0.7
CA A:ASN46 4.4 19.4 1.0
N A:ASP52 4.6 11.3 1.0
O4 A:G2F1131 4.6 16.4 0.7
N A:ASN46 4.7 19.0 1.0
O A:ASN44 4.7 13.7 1.0
CG A:ASN59 4.9 18.9 1.0
CA A:ASP52 4.9 10.8 1.0
OG A:SER50 4.9 15.2 1.0

Reference:

D.J.Vocadlo, G.J.Davies, R.Laine, S.G.Withers. Catalysis By Hen Egg-White Lysozyme Proceeds Via A Covalent Intermediate Nature V. 412 835 2001.
ISSN: ISSN 0028-0836
PubMed: 11518970
DOI: 10.1038/35090602
Page generated: Wed Jul 31 11:30:37 2024

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