Fluorine in PDB 1hwj: Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin
Enzymatic activity of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin
All present enzymatic activity of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin:
1.1.1.34;
Protein crystallography data
The structure of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin, PDB code: 1hwj
was solved by
E.S.Istvan,
J.Deisenhofer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.50 /
2.26
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.616,
172.983,
80.159,
90.00,
117.35,
90.00
|
R / Rfree (%)
|
22.1 /
23.7
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin
(pdb code 1hwj). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin, PDB code: 1hwj:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 1hwj
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Fluorine Binding Sites List in 1hwj
Fluorine binding site 1 out
of 4 in the Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2
b:41.6
occ:1.00
|
F1
|
A:1162
|
0.0
|
41.6
|
1.0
|
C84
|
A:1162
|
1.4
|
41.1
|
1.0
|
C83
|
A:1162
|
2.4
|
40.6
|
1.0
|
C85
|
A:1162
|
2.4
|
40.9
|
1.0
|
NE
|
A:ARG590
|
2.8
|
42.2
|
1.0
|
CZ
|
A:ARG590
|
2.9
|
42.0
|
1.0
|
NH2
|
A:ARG590
|
3.2
|
42.4
|
1.0
|
CG1
|
A:VAL683
|
3.3
|
40.2
|
1.0
|
CD
|
A:ARG590
|
3.3
|
40.9
|
1.0
|
NH1
|
A:ARG590
|
3.6
|
42.9
|
1.0
|
C82
|
A:1162
|
3.6
|
40.9
|
1.0
|
CG2
|
A:VAL683
|
3.6
|
40.4
|
1.0
|
C86
|
A:1162
|
3.7
|
41.3
|
1.0
|
OG
|
A:SER661
|
3.7
|
56.6
|
1.0
|
CB
|
A:SER684
|
3.8
|
35.3
|
1.0
|
CB
|
A:VAL683
|
4.0
|
39.8
|
1.0
|
O
|
A:VAL683
|
4.0
|
37.6
|
1.0
|
C
|
A:VAL683
|
4.1
|
38.1
|
1.0
|
CG
|
A:ARG590
|
4.1
|
40.7
|
1.0
|
N
|
A:SER684
|
4.2
|
37.1
|
1.0
|
C81
|
A:1162
|
4.2
|
41.1
|
1.0
|
CA
|
A:SER684
|
4.4
|
35.4
|
1.0
|
CA
|
A:VAL683
|
4.7
|
39.0
|
1.0
|
CB
|
A:SER661
|
4.7
|
54.7
|
1.0
|
OG
|
A:SER684
|
4.9
|
34.0
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 1hwj
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Fluorine Binding Sites List in 1hwj
Fluorine binding site 2 out
of 4 in the Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1
b:55.5
occ:1.00
|
F1
|
B:1161
|
0.0
|
55.5
|
1.0
|
C84
|
B:1161
|
1.4
|
54.6
|
1.0
|
C85
|
B:1161
|
2.4
|
53.9
|
1.0
|
C83
|
B:1161
|
2.4
|
54.5
|
1.0
|
NE
|
B:ARG590
|
2.9
|
47.5
|
1.0
|
CZ
|
B:ARG590
|
3.0
|
48.2
|
1.0
|
CG1
|
B:VAL683
|
3.2
|
47.7
|
1.0
|
NH2
|
B:ARG590
|
3.3
|
49.4
|
1.0
|
CD
|
B:ARG590
|
3.4
|
46.5
|
1.0
|
NH1
|
B:ARG590
|
3.6
|
47.3
|
1.0
|
CG2
|
B:VAL683
|
3.6
|
47.9
|
1.0
|
CB
|
B:SER684
|
3.6
|
44.9
|
1.0
|
C86
|
B:1161
|
3.7
|
52.7
|
1.0
|
C82
|
B:1161
|
3.7
|
52.9
|
1.0
|
OG
|
B:SER661
|
3.8
|
60.5
|
1.0
|
CB
|
B:VAL683
|
3.9
|
47.5
|
1.0
|
C
|
B:VAL683
|
4.0
|
46.2
|
1.0
|
O
|
B:VAL683
|
4.0
|
46.2
|
1.0
|
N
|
B:SER684
|
4.0
|
45.4
|
1.0
|
C81
|
B:1161
|
4.2
|
52.2
|
1.0
|
CG
|
B:ARG590
|
4.2
|
44.5
|
1.0
|
CA
|
B:SER684
|
4.3
|
43.7
|
1.0
|
CA
|
B:VAL683
|
4.6
|
46.8
|
1.0
|
OG
|
B:SER684
|
4.8
|
45.3
|
1.0
|
CB
|
B:SER661
|
4.8
|
58.7
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 1hwj
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Fluorine Binding Sites List in 1hwj
Fluorine binding site 3 out
of 4 in the Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F4
b:48.7
occ:1.00
|
F1
|
C:1164
|
0.0
|
48.7
|
1.0
|
C84
|
C:1164
|
1.4
|
47.6
|
1.0
|
C85
|
C:1164
|
2.4
|
47.0
|
1.0
|
C83
|
C:1164
|
2.4
|
47.6
|
1.0
|
NE
|
C:ARG590
|
2.9
|
47.1
|
1.0
|
CZ
|
C:ARG590
|
3.0
|
49.1
|
1.0
|
CG1
|
C:VAL683
|
3.2
|
43.1
|
1.0
|
NH2
|
C:ARG590
|
3.3
|
48.8
|
1.0
|
CD
|
C:ARG590
|
3.4
|
45.5
|
1.0
|
NH1
|
C:ARG590
|
3.6
|
49.5
|
1.0
|
CB
|
C:SER684
|
3.6
|
40.9
|
1.0
|
CG2
|
C:VAL683
|
3.6
|
42.4
|
1.0
|
C86
|
C:1164
|
3.6
|
46.9
|
1.0
|
C82
|
C:1164
|
3.7
|
47.1
|
1.0
|
C
|
C:VAL683
|
3.9
|
42.4
|
1.0
|
CB
|
C:VAL683
|
3.9
|
43.2
|
1.0
|
N
|
C:SER684
|
4.0
|
41.7
|
1.0
|
O
|
C:VAL683
|
4.0
|
42.2
|
1.0
|
OG
|
C:SER661
|
4.0
|
62.2
|
1.0
|
C81
|
C:1164
|
4.2
|
46.8
|
1.0
|
CG
|
C:ARG590
|
4.2
|
44.3
|
1.0
|
CA
|
C:SER684
|
4.2
|
40.5
|
1.0
|
CA
|
C:VAL683
|
4.5
|
43.4
|
1.0
|
OG
|
C:SER684
|
4.8
|
42.6
|
1.0
|
CB
|
C:SER661
|
4.9
|
61.0
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 1hwj
Go back to
Fluorine Binding Sites List in 1hwj
Fluorine binding site 4 out
of 4 in the Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Cerivastatin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F3
b:47.5
occ:1.00
|
F1
|
D:1163
|
0.0
|
47.5
|
1.0
|
C84
|
D:1163
|
1.3
|
46.9
|
1.0
|
C85
|
D:1163
|
2.4
|
46.9
|
1.0
|
C83
|
D:1163
|
2.4
|
47.3
|
1.0
|
NE
|
D:ARG590
|
2.9
|
42.8
|
1.0
|
CZ
|
D:ARG590
|
3.1
|
43.8
|
1.0
|
CG1
|
D:VAL683
|
3.1
|
43.0
|
1.0
|
NH2
|
D:ARG590
|
3.3
|
43.5
|
1.0
|
CD
|
D:ARG590
|
3.4
|
42.8
|
1.0
|
CB
|
D:SER684
|
3.6
|
40.8
|
1.0
|
CG2
|
D:VAL683
|
3.6
|
43.9
|
1.0
|
C86
|
D:1163
|
3.6
|
47.0
|
1.0
|
NH1
|
D:ARG590
|
3.6
|
44.2
|
1.0
|
C82
|
D:1163
|
3.6
|
46.4
|
1.0
|
CB
|
D:VAL683
|
3.9
|
42.6
|
1.0
|
C
|
D:VAL683
|
3.9
|
42.4
|
1.0
|
OG
|
D:SER661
|
3.9
|
55.9
|
1.0
|
N
|
D:SER684
|
3.9
|
41.5
|
1.0
|
O
|
D:VAL683
|
4.0
|
42.4
|
1.0
|
C81
|
D:1163
|
4.1
|
46.6
|
1.0
|
CG
|
D:ARG590
|
4.2
|
41.6
|
1.0
|
CA
|
D:SER684
|
4.2
|
40.2
|
1.0
|
CA
|
D:VAL683
|
4.5
|
42.9
|
1.0
|
OG
|
D:SER684
|
4.8
|
39.7
|
1.0
|
CB
|
D:SER661
|
4.9
|
54.8
|
1.0
|
|
Reference:
E.S.Istvan,
J.Deisenhofer.
Structural Mechanism For Statin Inhibition of Hmg-Coa Reductase. Science V. 292 1160 2001.
ISSN: ISSN 0036-8075
PubMed: 11349148
DOI: 10.1126/SCIENCE.1059344
Page generated: Wed Jul 31 11:32:59 2024
|