Fluorine in PDB 1hwk: Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin
Enzymatic activity of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin
All present enzymatic activity of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin:
1.1.1.34;
Protein crystallography data
The structure of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin, PDB code: 1hwk
was solved by
E.S.Istvan,
J.Deisenhofer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.40 /
2.22
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.596,
172.724,
80.008,
90.00,
117.73,
90.00
|
R / Rfree (%)
|
21.2 /
23.5
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin
(pdb code 1hwk). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin, PDB code: 1hwk:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 1hwk
Go back to
Fluorine Binding Sites List in 1hwk
Fluorine binding site 1 out
of 4 in the Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2
b:47.8
occ:1.00
|
F1
|
A:1172
|
0.0
|
47.8
|
1.0
|
C84
|
A:1172
|
1.4
|
45.7
|
1.0
|
C85
|
A:1172
|
2.4
|
45.3
|
1.0
|
C83
|
A:1172
|
2.4
|
45.0
|
1.0
|
NE
|
A:ARG590
|
2.8
|
39.9
|
1.0
|
CZ
|
A:ARG590
|
3.1
|
38.6
|
1.0
|
OG
|
A:SER661
|
3.3
|
55.5
|
1.0
|
CG1
|
A:VAL683
|
3.3
|
42.6
|
1.0
|
NH2
|
A:ARG590
|
3.3
|
40.8
|
1.0
|
CD
|
A:ARG590
|
3.4
|
39.1
|
1.0
|
CG2
|
A:VAL683
|
3.6
|
42.8
|
1.0
|
C86
|
A:1172
|
3.7
|
44.4
|
1.0
|
C82
|
A:1172
|
3.7
|
44.7
|
1.0
|
NH1
|
A:ARG590
|
4.0
|
38.7
|
1.0
|
CB
|
A:SER661
|
4.0
|
52.0
|
1.0
|
CB
|
A:VAL683
|
4.0
|
40.7
|
1.0
|
CG
|
A:ARG590
|
4.1
|
39.5
|
1.0
|
C81
|
A:1172
|
4.2
|
44.9
|
1.0
|
CB
|
A:SER684
|
4.2
|
38.0
|
1.0
|
O
|
A:VAL683
|
4.3
|
37.7
|
1.0
|
C
|
A:VAL683
|
4.3
|
39.5
|
1.0
|
N
|
A:SER684
|
4.5
|
38.6
|
1.0
|
CA
|
A:VAL683
|
4.8
|
40.5
|
1.0
|
CA
|
A:SER684
|
4.8
|
37.2
|
1.0
|
CA
|
A:SER661
|
5.0
|
51.5
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 1hwk
Go back to
Fluorine Binding Sites List in 1hwk
Fluorine binding site 2 out
of 4 in the Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1
b:51.1
occ:1.00
|
F1
|
B:1171
|
0.0
|
51.1
|
1.0
|
C84
|
B:1171
|
1.4
|
50.7
|
1.0
|
C85
|
B:1171
|
2.4
|
49.0
|
1.0
|
C83
|
B:1171
|
2.4
|
51.0
|
1.0
|
NH1
|
B:ARG590
|
3.0
|
50.6
|
1.0
|
CD
|
B:ARG590
|
3.2
|
48.0
|
1.0
|
OG
|
B:SER661
|
3.2
|
56.6
|
1.0
|
CG1
|
B:VAL683
|
3.3
|
46.6
|
1.0
|
CZ
|
B:ARG590
|
3.3
|
50.6
|
1.0
|
NE
|
B:ARG590
|
3.4
|
50.0
|
1.0
|
CG2
|
B:VAL683
|
3.6
|
47.0
|
1.0
|
C86
|
B:1171
|
3.6
|
48.5
|
1.0
|
C82
|
B:1171
|
3.7
|
49.7
|
1.0
|
CB
|
B:VAL683
|
4.0
|
46.1
|
1.0
|
CB
|
B:SER661
|
4.1
|
54.5
|
1.0
|
C81
|
B:1171
|
4.2
|
48.4
|
1.0
|
CB
|
B:SER684
|
4.2
|
45.1
|
1.0
|
NH2
|
B:ARG590
|
4.2
|
47.3
|
1.0
|
CG
|
B:ARG590
|
4.3
|
45.1
|
1.0
|
O
|
B:VAL683
|
4.3
|
43.3
|
1.0
|
C
|
B:VAL683
|
4.3
|
44.2
|
1.0
|
N
|
B:SER684
|
4.5
|
44.4
|
1.0
|
CA
|
B:VAL683
|
4.8
|
45.0
|
1.0
|
CA
|
B:SER684
|
4.8
|
42.7
|
1.0
|
CA
|
B:SER661
|
5.0
|
54.0
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 1hwk
Go back to
Fluorine Binding Sites List in 1hwk
Fluorine binding site 3 out
of 4 in the Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F4
b:51.8
occ:1.00
|
F1
|
C:1174
|
0.0
|
51.8
|
1.0
|
C84
|
C:1174
|
1.4
|
49.9
|
1.0
|
C85
|
C:1174
|
2.4
|
49.0
|
1.0
|
C83
|
C:1174
|
2.4
|
49.8
|
1.0
|
NE
|
C:ARG590
|
2.9
|
43.4
|
1.0
|
CG1
|
C:VAL683
|
3.1
|
44.2
|
1.0
|
CZ
|
C:ARG590
|
3.2
|
45.3
|
1.0
|
OG
|
C:SER661
|
3.3
|
57.9
|
1.0
|
NH2
|
C:ARG590
|
3.3
|
45.8
|
1.0
|
CD
|
C:ARG590
|
3.6
|
42.9
|
1.0
|
C86
|
C:1174
|
3.6
|
47.3
|
1.0
|
C82
|
C:1174
|
3.7
|
47.0
|
1.0
|
CG2
|
C:VAL683
|
3.8
|
42.6
|
1.0
|
CB
|
C:VAL683
|
4.0
|
42.2
|
1.0
|
CB
|
C:SER661
|
4.0
|
56.8
|
1.0
|
NH1
|
C:ARG590
|
4.0
|
44.0
|
1.0
|
C81
|
C:1174
|
4.2
|
46.4
|
1.0
|
CG
|
C:ARG590
|
4.2
|
43.4
|
1.0
|
C
|
C:VAL683
|
4.3
|
42.6
|
1.0
|
O
|
C:VAL683
|
4.3
|
42.0
|
1.0
|
CB
|
C:SER684
|
4.4
|
43.0
|
1.0
|
N
|
C:SER684
|
4.5
|
41.6
|
1.0
|
CA
|
C:VAL683
|
4.8
|
43.1
|
1.0
|
CA
|
C:SER684
|
4.9
|
41.0
|
1.0
|
CA
|
C:SER661
|
4.9
|
56.8
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 1hwk
Go back to
Fluorine Binding Sites List in 1hwk
Fluorine binding site 4 out
of 4 in the Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Complex of the Catalytic Portion of Human Hmg-Coa Reductase with Atorvastatin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F3
b:48.2
occ:1.00
|
F1
|
D:1173
|
0.0
|
48.2
|
1.0
|
C84
|
D:1173
|
1.3
|
45.4
|
1.0
|
C85
|
D:1173
|
2.4
|
44.3
|
1.0
|
C83
|
D:1173
|
2.4
|
46.8
|
1.0
|
NE
|
D:ARG590
|
2.9
|
38.8
|
1.0
|
CG1
|
D:VAL683
|
3.2
|
39.2
|
1.0
|
OG
|
D:SER661
|
3.2
|
53.0
|
1.0
|
CZ
|
D:ARG590
|
3.2
|
41.1
|
1.0
|
NH2
|
D:ARG590
|
3.3
|
43.4
|
1.0
|
CD
|
D:ARG590
|
3.6
|
39.5
|
1.0
|
C86
|
D:1173
|
3.6
|
44.6
|
1.0
|
C82
|
D:1173
|
3.6
|
44.1
|
1.0
|
CG2
|
D:VAL683
|
3.9
|
41.5
|
1.0
|
CB
|
D:SER661
|
3.9
|
48.6
|
1.0
|
NH1
|
D:ARG590
|
4.1
|
40.2
|
1.0
|
CB
|
D:VAL683
|
4.1
|
39.6
|
1.0
|
C81
|
D:1173
|
4.1
|
44.4
|
1.0
|
CG
|
D:ARG590
|
4.3
|
37.3
|
1.0
|
C
|
D:VAL683
|
4.5
|
41.3
|
1.0
|
O
|
D:VAL683
|
4.5
|
40.2
|
1.0
|
CB
|
D:SER684
|
4.5
|
40.9
|
1.0
|
N
|
D:SER684
|
4.7
|
40.0
|
1.0
|
CA
|
D:SER661
|
4.8
|
48.4
|
1.0
|
CA
|
D:VAL683
|
4.9
|
40.8
|
1.0
|
|
Reference:
E.S.Istvan,
J.Deisenhofer.
Structural Mechanism For Statin Inhibition of Hmg-Coa Reductase. Science V. 292 1160 2001.
ISSN: ISSN 0036-8075
PubMed: 11349148
DOI: 10.1126/SCIENCE.1059344
Page generated: Wed Jul 31 11:33:11 2024
|