Fluorine in PDB 1j56: Minimized Average Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structure Incorporating Active Site Contacts

The binding sites of Fluorine atom in the Minimized Average Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structure Incorporating Active Site Contacts (pdb code 1j56). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Minimized Average Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structure Incorporating Active Site Contacts, PDB code: 1j56:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Minimized Average Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structure Incorporating Active Site Contacts


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Minimized Average Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structure Incorporating Active Site Contacts within 5.0Å range: probe atom residue distance (Å) B Occ A:F125 b:0.0 occ:1.00 F1 A:BEF125 0.0 0.0 1.0 BE A:BEF125 1.5 0.0 1.0 HG23 A:ILE55 2.1 0.0 1.0 H A:ILE55 2.2 0.0 1.0 F2 A:BEF125 2.4 0.0 1.0 F3 A:BEF125 2.4 0.0 1.0 OD1 A:ASP54 2.5 0.0 1.0 HB2 A:ARG56 2.6 0.0 1.0 HB3 A:ARG56 2.7 0.0 1.0 HE1 A:HIS84 2.9 0.0 1.0 CG A:ASP54 2.9 0.0 1.0 N A:ILE55 3.0 0.0 1.0 OD2 A:ASP54 3.0 0.0 1.0 C A:ILE55 3.0 0.0 1.0 CB A:ARG56 3.1 0.0 1.0 CG2 A:ILE55 3.2 0.0 1.0 N A:ARG56 3.2 0.0 1.0 O A:ILE55 3.3 0.0 1.0 CA A:ILE55 3.4 0.0 1.0 HE2 A:HIS84 3.4 0.0 1.0 H A:ARG56 3.5 0.0 1.0 HG21 A:ILE55 3.6 0.0 1.0 HB A:THR82 3.6 0.0 1.0 CE1 A:HIS84 3.7 0.0 1.0 CA A:ARG56 3.8 0.0 1.0 HG22 A:ILE55 3.8 0.0 1.0 HZ2 A:LYS104 3.9 0.0 1.0 NE2 A:HIS84 3.9 0.0 1.0 CB A:ILE55 3.9 0.0 1.0 C A:ASP54 4.1 0.0 1.0 CB A:ASP54 4.1 0.0 1.0 HZ1 A:LYS104 4.3 0.0 1.0 HD2 A:ARG56 4.3 0.0 1.0 HA A:ARG56 4.3 0.0 1.0 HA A:ASP54 4.3 0.0 1.0 CG A:ARG56 4.4 0.0 1.0 HA A:ILE55 4.4 0.0 1.0 HG12 A:ILE55 4.4 0.0 1.0 CA A:ASP54 4.4 0.0 1.0 HB3 A:ASP54 4.5 0.0 1.0 HG3 A:ARG56 4.5 0.0 1.0 HG22 A:THR82 4.5 0.0 1.0 NZ A:LYS104 4.6 0.0 1.0 HG1 A:THR82 4.6 0.0 1.0 HD3 A:LYS104 4.6 0.0 1.0 CB A:THR82 4.6 0.0 1.0 HH11 A:ARG56 4.6 0.0 1.0 HD2 A:LYS104 4.7 0.0 1.0 HB A:ILE55 4.7 0.0 1.0 CG1 A:ILE55 4.7 0.0 1.0 CD A:ARG56 4.9 0.0 1.0 ND1 A:HIS84 5.0 0.0 1.0 HB2 A:ASP54 5.0 0.0 1.0

Fluorine binding site 2 out of 3 in the Minimized Average Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structure Incorporating Active Site Contacts


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Minimized Average Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structure Incorporating Active Site Contacts within 5.0Å range: probe atom residue distance (Å) B Occ A:F125 b:0.0 occ:1.00 F2 A:BEF125 0.0 0.0 1.0 BE A:BEF125 1.5 0.0 1.0 HZ1 A:LYS104 2.3 0.0 1.0 F3 A:BEF125 2.4 0.0 1.0 HD3 A:LYS104 2.4 0.0 1.0 F1 A:BEF125 2.4 0.0 1.0 OD1 A:ASP54 2.5 0.0 1.0 HZ2 A:LYS104 2.7 0.0 1.0 NZ A:LYS104 2.9 0.0 1.0 CD A:LYS104 3.2 0.0 1.0 HD2 A:LYS104 3.3 0.0 1.0 CG A:ASP54 3.3 0.0 1.0 OD2 A:ASP54 3.4 0.0 1.0 CE A:LYS104 3.6 0.0 1.0 HZ3 A:LYS104 3.8 0.0 1.0 HB3 A:ARG56 3.9 0.0 1.0 HE1 A:HIS84 3.9 0.0 1.0 H A:ILE55 4.0 0.0 1.0 HG1 A:THR82 4.0 0.0 1.0 HH11 A:ARG56 4.1 0.0 1.0 HG23 A:ILE55 4.1 0.0 1.0 HB2 A:ARG56 4.2 0.0 1.0 HB A:THR82 4.3 0.0 1.0 HD2 A:ARG56 4.3 0.0 1.0 HE2 A:LYS104 4.4 0.0 1.0 HE3 A:LYS104 4.4 0.0 1.0 CG A:LYS104 4.5 0.0 1.0 CB A:ARG56 4.5 0.0 1.0 HG2 A:LYS104 4.5 0.0 1.0 HB2 A:MET81 4.5 0.0 1.0 OG1 A:THR82 4.7 0.0 1.0 CB A:ASP54 4.8 0.0 1.0 N A:ILE55 4.9 0.0 1.0 CE1 A:HIS84 4.9 0.0 1.0 HG22 A:THR82 5.0 0.0 1.0 NH1 A:ARG56 5.0 0.0 1.0 HA A:ASP54 5.0 0.0 1.0

Fluorine binding site 3 out of 3 in the Minimized Average Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structure Incorporating Active Site Contacts


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Minimized Average Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structure Incorporating Active Site Contacts within 5.0Å range: probe atom residue distance (Å) B Occ A:F125 b:0.0 occ:1.00 F3 A:BEF125 0.0 0.0 1.0 BE A:BEF125 1.5 0.0 1.0 HB A:THR82 2.1 0.0 1.0 HG1 A:THR82 2.3 0.0 1.0 HZ2 A:LYS104 2.4 0.0 1.0 F2 A:BEF125 2.4 0.0 1.0 F1 A:BEF125 2.4 0.0 1.0 OD1 A:ASP54 2.5 0.0 1.0 HG23 A:ILE55 2.5 0.0 1.0 HD2 A:LYS104 2.6 0.0 1.0 CB A:THR82 2.9 0.0 1.0 HG21 A:ILE55 3.0 0.0 1.0 OG1 A:THR82 3.0 0.0 1.0 HB2 A:MET81 3.0 0.0 1.0 CG2 A:ILE55 3.2 0.0 1.0 NZ A:LYS104 3.2 0.0 1.0 HD3 A:LYS104 3.3 0.0 1.0 CD A:LYS104 3.3 0.0 1.0 HE1 A:HIS84 3.3 0.0 1.0 H A:ILE55 3.3 0.0 1.0 HZ1 A:LYS104 3.3 0.0 1.0 HG22 A:ILE55 3.6 0.0 1.0 CE A:LYS104 3.6 0.0 1.0 CG A:ASP54 3.7 0.0 1.0 HG22 A:THR82 3.7 0.0 1.0 HE3 A:LYS104 3.7 0.0 1.0 N A:THR82 3.7 0.0 1.0 C A:MET81 3.8 0.0 1.0 HG2 A:MET81 3.8 0.0 1.0 HA A:ASP54 3.9 0.0 1.0 CG2 A:THR82 3.9 0.0 1.0 O A:MET81 3.9 0.0 1.0 CA A:THR82 3.9 0.0 1.0 CB A:MET81 3.9 0.0 1.0 N A:ILE55 4.0 0.0 1.0 HZ3 A:LYS104 4.0 0.0 1.0 H A:THR82 4.1 0.0 1.0 HA A:LYS104 4.1 0.0 1.0 CE1 A:HIS84 4.2 0.0 1.0 CG A:MET81 4.2 0.0 1.0 HG3 A:MET81 4.2 0.0 1.0 OD2 A:ASP54 4.3 0.0 1.0 HG21 A:THR82 4.4 0.0 1.0 CA A:MET81 4.4 0.0 1.0 CB A:ILE55 4.5 0.0 1.0 CA A:ASP54 4.6 0.0 1.0 C A:ASP54 4.6 0.0 1.0 HE2 A:LYS104 4.7 0.0 1.0 H A:MET81 4.7 0.0 1.0 CA A:ILE55 4.7 0.0 1.0 HA A:THR82 4.7 0.0 1.0 CB A:ASP54 4.7 0.0 1.0 CG A:LYS104 4.7 0.0 1.0 HG21 A:ILE80 4.7 0.0 1.0 HG23 A:THR82 4.8 0.0 1.0 HB3 A:MET81 4.8 0.0 1.0 HB2 A:ARG56 4.8 0.0 1.0 HE2 A:HIS84 4.8 0.0 1.0 HB2 A:LYS104 4.8 0.0 1.0 NE2 A:HIS84 4.9 0.0 1.0 C A:THR82 4.9 0.0 1.0 C A:ILE55 4.9 0.0 1.0 N A:MET81 4.9 0.0 1.0

C.A.Hastings, S.-Y.Lee, H.S.Cho, D.Yan, S.Kustu, D.E.Wemmer. High-Resolution Solution Structure of the Beryllofluoride-Activated Ntrc Receiver Domain Biochemistry V. 42 9081 2003.
ISSN: ISSN 0006-2960
PubMed: 12885241
DOI: 10.1021/BI0273866