Fluorine in PDB 1k2o: Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Enzymatic activity of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
All present enzymatic activity of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II):
1.14.15.1;
Protein crystallography data
The structure of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II), PDB code: 1k2o
was solved by
A.R.Dunn,
I.J.Dmochowski,
A.M.Bilwes,
H.B.Gray,
B.R.Crane,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.81 /
1.65
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.870,
67.050,
72.520,
71.16,
65.20,
62.31
|
R / Rfree (%)
|
21 /
22.6
|
Other elements in 1k2o:
The structure of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
32;
Binding sites:
The binding sites of Fluorine atom in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
(pdb code 1k2o). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 32 binding sites of Fluorine where determined in the
Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II), PDB code: 1k2o:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 32 in 1k2o
Go back to
Fluorine Binding Sites List in 1k2o
Fluorine binding site 1 out
of 32 in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F900
b:23.4
occ:0.41
|
F46
|
A:RFA900
|
0.0
|
23.4
|
0.4
|
F46
|
A:RFB901
|
0.2
|
23.0
|
0.5
|
C41
|
A:RFB901
|
1.2
|
23.2
|
0.5
|
C41
|
A:RFA900
|
1.4
|
23.6
|
0.4
|
C40
|
A:RFB901
|
2.2
|
23.8
|
0.5
|
C42
|
A:RFB901
|
2.3
|
22.6
|
0.5
|
C40
|
A:RFA900
|
2.4
|
24.1
|
0.4
|
C42
|
A:RFA900
|
2.4
|
23.0
|
0.4
|
C39
|
A:RFB901
|
2.6
|
25.2
|
0.5
|
F47
|
A:RFB901
|
2.7
|
22.4
|
0.5
|
F47
|
A:RFA900
|
2.7
|
22.8
|
0.4
|
C39
|
A:RFA900
|
2.8
|
25.7
|
0.4
|
C
|
A:GLY93
|
3.0
|
26.4
|
1.0
|
O
|
A:GLY93
|
3.1
|
26.4
|
1.0
|
CA
|
A:GLY93
|
3.4
|
26.7
|
1.0
|
N
|
A:GLU94
|
3.5
|
26.0
|
1.0
|
C45
|
A:RFB901
|
3.5
|
23.5
|
0.5
|
CB
|
A:GLU94
|
3.6
|
26.3
|
1.0
|
C43
|
A:RFB901
|
3.6
|
22.4
|
0.5
|
CD1
|
A:PHE193
|
3.6
|
21.8
|
1.0
|
O
|
A:ALA92
|
3.6
|
27.7
|
1.0
|
CG
|
A:PHE193
|
3.6
|
21.8
|
1.0
|
C45
|
A:RFA900
|
3.7
|
23.7
|
0.4
|
C22
|
A:RFB901
|
3.7
|
26.5
|
0.5
|
C43
|
A:RFA900
|
3.7
|
22.7
|
0.4
|
C23
|
A:RFB901
|
3.8
|
27.0
|
0.5
|
CE1
|
A:PHE193
|
3.8
|
21.4
|
1.0
|
C22
|
A:RFA900
|
3.8
|
27.2
|
0.4
|
CD2
|
A:PHE193
|
3.9
|
21.9
|
1.0
|
C23
|
A:RFA900
|
3.9
|
27.8
|
0.4
|
CG
|
A:GLU94
|
3.9
|
27.2
|
1.0
|
C44
|
A:RFB901
|
4.0
|
22.9
|
0.5
|
CA
|
A:GLU94
|
4.0
|
25.6
|
1.0
|
CZ
|
A:PHE193
|
4.0
|
21.7
|
1.0
|
CE2
|
A:PHE193
|
4.1
|
21.9
|
1.0
|
C44
|
A:RFA900
|
4.2
|
23.1
|
0.4
|
N
|
A:GLY93
|
4.2
|
27.1
|
1.0
|
CB
|
A:PHE193
|
4.2
|
22.1
|
1.0
|
CD
|
A:GLU94
|
4.2
|
27.9
|
1.0
|
C
|
A:ALA92
|
4.2
|
27.6
|
1.0
|
OE1
|
A:GLU94
|
4.3
|
28.3
|
1.0
|
F49
|
A:RFB901
|
4.6
|
23.7
|
0.5
|
C50
|
A:RFB901
|
4.7
|
21.3
|
0.5
|
N
|
A:ALA95
|
4.8
|
24.4
|
1.0
|
C
|
A:GLU94
|
4.8
|
25.1
|
1.0
|
F49
|
A:RFA900
|
4.8
|
23.6
|
0.4
|
C50
|
A:RFA900
|
4.9
|
21.8
|
0.4
|
OE2
|
A:GLU94
|
4.9
|
28.1
|
1.0
|
F56
|
A:RFA900
|
4.9
|
21.3
|
0.4
|
F56
|
A:RFB901
|
4.9
|
20.7
|
0.5
|
C21
|
A:RFB901
|
5.0
|
27.2
|
0.5
|
|
Fluorine binding site 2 out
of 32 in 1k2o
Go back to
Fluorine Binding Sites List in 1k2o
Fluorine binding site 2 out
of 32 in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F900
b:22.8
occ:0.41
|
F47
|
A:RFA900
|
0.0
|
22.8
|
0.4
|
F47
|
A:RFB901
|
0.1
|
22.4
|
0.5
|
C42
|
A:RFB901
|
1.3
|
22.6
|
0.5
|
C42
|
A:RFA900
|
1.4
|
23.0
|
0.4
|
C43
|
A:RFB901
|
2.3
|
22.4
|
0.5
|
C41
|
A:RFB901
|
2.4
|
23.2
|
0.5
|
C41
|
A:RFA900
|
2.4
|
23.6
|
0.4
|
C43
|
A:RFA900
|
2.4
|
22.7
|
0.4
|
F46
|
A:RFA900
|
2.7
|
23.4
|
0.4
|
C50
|
A:RFB901
|
2.8
|
21.3
|
0.5
|
F46
|
A:RFB901
|
2.8
|
23.0
|
0.5
|
F56
|
A:RFA900
|
2.8
|
21.3
|
0.4
|
C50
|
A:RFA900
|
2.9
|
21.8
|
0.4
|
F56
|
A:RFB901
|
2.9
|
20.7
|
0.5
|
C51
|
A:RFB901
|
3.0
|
20.8
|
0.5
|
C51
|
A:RFA900
|
3.0
|
21.4
|
0.4
|
CA
|
A:GLY93
|
3.4
|
26.7
|
1.0
|
CE1
|
A:PHE87
|
3.4
|
23.7
|
1.0
|
O
|
A:GLY93
|
3.5
|
26.4
|
1.0
|
C40
|
A:RFB901
|
3.6
|
23.8
|
0.5
|
C44
|
A:RFB901
|
3.6
|
22.9
|
0.5
|
C40
|
A:RFA900
|
3.7
|
24.1
|
0.4
|
C44
|
A:RFA900
|
3.7
|
23.1
|
0.4
|
CD2
|
A:TYR96
|
3.7
|
18.5
|
1.0
|
C
|
A:GLY93
|
3.8
|
26.4
|
1.0
|
CE1
|
A:PHE193
|
3.8
|
21.4
|
1.0
|
CZ
|
A:PHE193
|
3.8
|
21.7
|
1.0
|
C55
|
A:RFB901
|
3.8
|
20.9
|
0.5
|
CZ
|
A:PHE87
|
3.9
|
23.7
|
1.0
|
C55
|
A:RFA900
|
4.0
|
21.4
|
0.4
|
O
|
A:ALA92
|
4.1
|
27.7
|
1.0
|
CB
|
A:TYR96
|
4.1
|
19.9
|
1.0
|
C45
|
A:RFB901
|
4.1
|
23.5
|
0.5
|
C52
|
A:RFB901
|
4.1
|
20.4
|
0.5
|
C52
|
A:RFA900
|
4.2
|
21.1
|
0.4
|
C45
|
A:RFA900
|
4.2
|
23.7
|
0.4
|
CD1
|
A:PHE87
|
4.2
|
23.5
|
1.0
|
CG
|
A:TYR96
|
4.4
|
19.0
|
1.0
|
F59
|
A:RFB901
|
4.4
|
20.7
|
0.5
|
CD1
|
A:PHE193
|
4.5
|
21.8
|
1.0
|
CE2
|
A:PHE193
|
4.5
|
21.9
|
1.0
|
N
|
A:GLY93
|
4.6
|
27.1
|
1.0
|
F59
|
A:RFA900
|
4.6
|
21.2
|
0.4
|
CE2
|
A:TYR96
|
4.7
|
18.2
|
1.0
|
C54
|
A:RFB901
|
4.7
|
20.5
|
0.5
|
F48
|
A:RFB901
|
4.8
|
23.3
|
0.5
|
C
|
A:ALA92
|
4.8
|
27.6
|
1.0
|
C39
|
A:RFB901
|
4.8
|
25.2
|
0.5
|
F48
|
A:RFA900
|
4.9
|
23.3
|
0.4
|
CE2
|
A:PHE87
|
4.9
|
23.6
|
1.0
|
F57
|
A:RFA900
|
4.9
|
21.0
|
0.4
|
C39
|
A:RFA900
|
4.9
|
25.7
|
0.4
|
N
|
A:GLU94
|
4.9
|
26.0
|
1.0
|
C53
|
A:RFB901
|
4.9
|
20.2
|
0.5
|
C54
|
A:RFA900
|
4.9
|
21.1
|
0.4
|
F57
|
A:RFB901
|
4.9
|
20.3
|
0.5
|
C53
|
A:RFA900
|
5.0
|
20.9
|
0.4
|
|
Fluorine binding site 3 out
of 32 in 1k2o
Go back to
Fluorine Binding Sites List in 1k2o
Fluorine binding site 3 out
of 32 in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F900
b:23.3
occ:0.41
|
F48
|
A:RFA900
|
0.0
|
23.3
|
0.4
|
F48
|
A:RFB901
|
0.2
|
23.3
|
0.5
|
C44
|
A:RFA900
|
1.4
|
23.1
|
0.4
|
C44
|
A:RFB901
|
1.5
|
22.9
|
0.5
|
C45
|
A:RFA900
|
2.4
|
23.7
|
0.4
|
C43
|
A:RFA900
|
2.4
|
22.7
|
0.4
|
C43
|
A:RFB901
|
2.5
|
22.4
|
0.5
|
C45
|
A:RFB901
|
2.6
|
23.5
|
0.5
|
F49
|
A:RFA900
|
2.7
|
23.6
|
0.4
|
F59
|
A:RFB901
|
2.8
|
20.7
|
0.5
|
F59
|
A:RFA900
|
2.8
|
21.2
|
0.4
|
C50
|
A:RFA900
|
2.8
|
21.8
|
0.4
|
C50
|
A:RFB901
|
2.8
|
21.3
|
0.5
|
F49
|
A:RFB901
|
2.9
|
23.7
|
0.5
|
C55
|
A:RFB901
|
3.0
|
20.9
|
0.5
|
C55
|
A:RFA900
|
3.0
|
21.4
|
0.4
|
CA
|
A:THR185
|
3.2
|
23.6
|
1.0
|
O
|
A:THR185
|
3.4
|
24.0
|
1.0
|
CB
|
A:THR185
|
3.5
|
23.2
|
1.0
|
C40
|
A:RFA900
|
3.7
|
24.1
|
0.4
|
C
|
A:THR185
|
3.7
|
24.1
|
1.0
|
C42
|
A:RFA900
|
3.7
|
23.0
|
0.4
|
CG2
|
A:THR185
|
3.8
|
23.2
|
1.0
|
O
|
A:MET184
|
3.8
|
23.4
|
1.0
|
C42
|
A:RFB901
|
3.8
|
22.6
|
0.5
|
C40
|
A:RFB901
|
3.9
|
23.8
|
0.5
|
C51
|
A:RFB901
|
3.9
|
20.8
|
0.5
|
C51
|
A:RFA900
|
3.9
|
21.4
|
0.4
|
C54
|
A:RFB901
|
4.1
|
20.5
|
0.5
|
O
|
A:HOH1066
|
4.1
|
26.7
|
1.0
|
C54
|
A:RFA900
|
4.2
|
21.1
|
0.4
|
C41
|
A:RFA900
|
4.2
|
23.6
|
0.4
|
N
|
A:THR185
|
4.3
|
23.4
|
1.0
|
C41
|
A:RFB901
|
4.3
|
23.2
|
0.5
|
C
|
A:MET184
|
4.4
|
23.6
|
1.0
|
O
|
A:HOH1439
|
4.5
|
50.5
|
1.0
|
F56
|
A:RFA900
|
4.6
|
21.3
|
0.4
|
F56
|
A:RFB901
|
4.6
|
20.7
|
0.5
|
O
|
A:HOH1234
|
4.7
|
30.2
|
1.0
|
F58
|
A:RFB901
|
4.8
|
20.2
|
0.5
|
C52
|
A:RFB901
|
4.8
|
20.4
|
0.5
|
F47
|
A:RFA900
|
4.9
|
22.8
|
0.4
|
C52
|
A:RFA900
|
4.9
|
21.1
|
0.4
|
C39
|
A:RFA900
|
4.9
|
25.7
|
0.4
|
F58
|
A:RFA900
|
4.9
|
20.8
|
0.4
|
C53
|
A:RFB901
|
4.9
|
20.2
|
0.5
|
OG1
|
A:THR185
|
4.9
|
22.9
|
1.0
|
N
|
A:ARG186
|
4.9
|
24.5
|
1.0
|
F47
|
A:RFB901
|
4.9
|
22.4
|
0.5
|
C53
|
A:RFA900
|
5.0
|
20.9
|
0.4
|
|
Fluorine binding site 4 out
of 32 in 1k2o
Go back to
Fluorine Binding Sites List in 1k2o
Fluorine binding site 4 out
of 32 in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F900
b:23.6
occ:0.41
|
F49
|
A:RFA900
|
0.0
|
23.6
|
0.4
|
F49
|
A:RFB901
|
0.3
|
23.7
|
0.5
|
C45
|
A:RFA900
|
1.4
|
23.7
|
0.4
|
C45
|
A:RFB901
|
1.5
|
23.5
|
0.5
|
C44
|
A:RFB901
|
2.3
|
22.9
|
0.5
|
C44
|
A:RFA900
|
2.4
|
23.1
|
0.4
|
C40
|
A:RFA900
|
2.4
|
24.1
|
0.4
|
F48
|
A:RFB901
|
2.6
|
23.3
|
0.5
|
C40
|
A:RFB901
|
2.6
|
23.8
|
0.5
|
F48
|
A:RFA900
|
2.7
|
23.3
|
0.4
|
C39
|
A:RFA900
|
2.8
|
25.7
|
0.4
|
C39
|
A:RFB901
|
3.1
|
25.2
|
0.5
|
C22
|
A:RFA900
|
3.1
|
27.2
|
0.4
|
O
|
A:MET184
|
3.2
|
23.4
|
1.0
|
C22
|
A:RFB901
|
3.3
|
26.5
|
0.5
|
C21
|
A:RFA900
|
3.3
|
28.1
|
0.4
|
C21
|
A:RFB901
|
3.4
|
27.2
|
0.5
|
C41
|
A:RFA900
|
3.7
|
23.6
|
0.4
|
C43
|
A:RFB901
|
3.7
|
22.4
|
0.5
|
C43
|
A:RFA900
|
3.7
|
22.7
|
0.4
|
CD
|
A:PRO187
|
3.7
|
25.5
|
1.0
|
C41
|
A:RFB901
|
3.8
|
23.2
|
0.5
|
C23
|
A:RFA900
|
4.0
|
27.8
|
0.4
|
O
|
A:THR185
|
4.1
|
24.0
|
1.0
|
CA
|
A:THR185
|
4.1
|
23.6
|
1.0
|
C23
|
A:RFB901
|
4.1
|
27.0
|
0.5
|
CG
|
A:PRO187
|
4.1
|
25.5
|
1.0
|
C
|
A:THR185
|
4.1
|
24.1
|
1.0
|
C42
|
A:RFA900
|
4.2
|
23.0
|
0.4
|
O
|
A:HOH1391
|
4.2
|
23.9
|
1.0
|
C42
|
A:RFB901
|
4.2
|
22.6
|
0.5
|
C
|
A:MET184
|
4.3
|
23.6
|
1.0
|
C20
|
A:RFB901
|
4.3
|
27.9
|
0.5
|
C20
|
A:RFA900
|
4.3
|
28.9
|
0.4
|
N
|
A:THR185
|
4.6
|
23.4
|
1.0
|
F46
|
A:RFA900
|
4.8
|
23.4
|
0.4
|
C50
|
A:RFB901
|
4.8
|
21.3
|
0.5
|
F59
|
A:RFB901
|
4.8
|
20.7
|
0.5
|
C24
|
A:RFB901
|
4.8
|
27.7
|
0.5
|
C24
|
A:RFA900
|
4.8
|
28.6
|
0.4
|
C50
|
A:RFA900
|
4.8
|
21.8
|
0.4
|
N
|
A:ARG186
|
4.9
|
24.5
|
1.0
|
F59
|
A:RFA900
|
4.9
|
21.2
|
0.4
|
N25
|
A:RFB901
|
4.9
|
28.2
|
0.5
|
F46
|
A:RFB901
|
5.0
|
23.0
|
0.5
|
N25
|
A:RFA900
|
5.0
|
29.3
|
0.4
|
O
|
A:HOH1122
|
5.0
|
21.8
|
1.0
|
|
Fluorine binding site 5 out
of 32 in 1k2o
Go back to
Fluorine Binding Sites List in 1k2o
Fluorine binding site 5 out
of 32 in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F900
b:21.3
occ:0.41
|
F56
|
A:RFA900
|
0.0
|
21.3
|
0.4
|
F56
|
A:RFB901
|
0.2
|
20.7
|
0.5
|
C51
|
A:RFB901
|
1.2
|
20.8
|
0.5
|
C51
|
A:RFA900
|
1.4
|
21.4
|
0.4
|
C52
|
A:RFB901
|
2.2
|
20.4
|
0.5
|
C50
|
A:RFB901
|
2.3
|
21.3
|
0.5
|
C52
|
A:RFA900
|
2.4
|
21.1
|
0.4
|
C50
|
A:RFA900
|
2.4
|
21.8
|
0.4
|
F57
|
A:RFB901
|
2.6
|
20.3
|
0.5
|
F57
|
A:RFA900
|
2.7
|
21.0
|
0.4
|
C43
|
A:RFB901
|
2.8
|
22.4
|
0.5
|
F47
|
A:RFB901
|
2.8
|
22.4
|
0.5
|
F47
|
A:RFA900
|
2.8
|
22.8
|
0.4
|
C43
|
A:RFA900
|
2.9
|
22.7
|
0.4
|
C42
|
A:RFB901
|
3.0
|
22.6
|
0.5
|
C42
|
A:RFA900
|
3.0
|
23.0
|
0.4
|
CE1
|
A:PHE193
|
3.3
|
21.4
|
1.0
|
C53
|
A:RFB901
|
3.5
|
20.2
|
0.5
|
C55
|
A:RFB901
|
3.6
|
20.9
|
0.5
|
CZ
|
A:PHE193
|
3.6
|
21.7
|
1.0
|
CD2
|
A:TYR96
|
3.6
|
18.5
|
1.0
|
C53
|
A:RFA900
|
3.7
|
20.9
|
0.4
|
C55
|
A:RFA900
|
3.7
|
21.4
|
0.4
|
C44
|
A:RFB901
|
3.9
|
22.9
|
0.5
|
CE2
|
A:TYR96
|
3.9
|
18.2
|
1.0
|
C44
|
A:RFA900
|
3.9
|
23.1
|
0.4
|
C54
|
A:RFB901
|
4.0
|
20.5
|
0.5
|
C41
|
A:RFA900
|
4.2
|
23.6
|
0.4
|
C54
|
A:RFA900
|
4.2
|
21.1
|
0.4
|
C41
|
A:RFB901
|
4.2
|
23.2
|
0.5
|
CG2
|
A:THR185
|
4.2
|
23.2
|
1.0
|
F48
|
A:RFB901
|
4.5
|
23.3
|
0.5
|
CD1
|
A:PHE193
|
4.5
|
21.8
|
1.0
|
F48
|
A:RFA900
|
4.6
|
23.3
|
0.4
|
N60
|
A:RFB901
|
4.6
|
19.6
|
0.5
|
F59
|
A:RFB901
|
4.7
|
20.7
|
0.5
|
N60
|
A:RFA900
|
4.7
|
20.5
|
0.4
|
CG1
|
A:VAL247
|
4.8
|
15.9
|
1.0
|
CE2
|
A:PHE98
|
4.8
|
18.6
|
1.0
|
C45
|
A:RFB901
|
4.9
|
23.5
|
0.5
|
CG
|
A:TYR96
|
4.9
|
19.0
|
1.0
|
C45
|
A:RFA900
|
4.9
|
23.7
|
0.4
|
F59
|
A:RFA900
|
4.9
|
21.2
|
0.4
|
F46
|
A:RFA900
|
4.9
|
23.4
|
0.4
|
CE2
|
A:PHE193
|
4.9
|
21.9
|
1.0
|
F46
|
A:RFB901
|
4.9
|
23.0
|
0.5
|
CE1
|
A:PHE87
|
4.9
|
23.7
|
1.0
|
CZ
|
A:PHE87
|
4.9
|
23.7
|
1.0
|
C40
|
A:RFA900
|
5.0
|
24.1
|
0.4
|
C40
|
A:RFB901
|
5.0
|
23.8
|
0.5
|
|
Fluorine binding site 6 out
of 32 in 1k2o
Go back to
Fluorine Binding Sites List in 1k2o
Fluorine binding site 6 out
of 32 in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F900
b:21.0
occ:0.41
|
F57
|
A:RFA900
|
0.0
|
21.0
|
0.4
|
F57
|
A:RFB901
|
0.2
|
20.3
|
0.5
|
C52
|
A:RFB901
|
1.3
|
20.4
|
0.5
|
C52
|
A:RFA900
|
1.4
|
21.1
|
0.4
|
C53
|
A:RFB901
|
2.3
|
20.2
|
0.5
|
C51
|
A:RFA900
|
2.4
|
21.4
|
0.4
|
C51
|
A:RFB901
|
2.4
|
20.8
|
0.5
|
C53
|
A:RFA900
|
2.4
|
20.9
|
0.4
|
N60
|
A:RFB901
|
2.6
|
19.6
|
0.5
|
F56
|
A:RFA900
|
2.7
|
21.3
|
0.4
|
N60
|
A:RFA900
|
2.8
|
20.5
|
0.4
|
F56
|
A:RFB901
|
2.8
|
20.7
|
0.5
|
CE2
|
A:TYR96
|
3.2
|
18.2
|
1.0
|
C54
|
A:RFB901
|
3.6
|
20.5
|
0.5
|
CG1
|
A:VAL247
|
3.6
|
15.9
|
1.0
|
C50
|
A:RFB901
|
3.7
|
21.3
|
0.5
|
C54
|
A:RFA900
|
3.7
|
21.1
|
0.4
|
C50
|
A:RFA900
|
3.7
|
21.8
|
0.4
|
CD2
|
A:TYR96
|
3.9
|
18.5
|
1.0
|
C61
|
A:RFB901
|
3.9
|
19.0
|
0.5
|
C61
|
A:RFA900
|
4.1
|
20.1
|
0.4
|
C55
|
A:RFB901
|
4.1
|
20.9
|
0.5
|
CE2
|
A:PHE98
|
4.1
|
18.6
|
1.0
|
C55
|
A:RFA900
|
4.2
|
21.4
|
0.4
|
C62
|
A:RFB901
|
4.2
|
18.8
|
0.5
|
CZ
|
A:TYR96
|
4.2
|
18.1
|
1.0
|
C62
|
A:RFA900
|
4.2
|
20.0
|
0.4
|
CD2
|
A:PHE98
|
4.3
|
18.3
|
1.0
|
OH
|
A:TYR96
|
4.3
|
17.7
|
1.0
|
C68
|
A:RFB901
|
4.4
|
18.8
|
0.5
|
C68
|
A:RFA900
|
4.4
|
19.9
|
0.4
|
C63
|
A:RFB901
|
4.5
|
18.9
|
0.5
|
O
|
A:HOH1050
|
4.5
|
27.3
|
1.0
|
CB
|
A:VAL247
|
4.5
|
15.7
|
1.0
|
C63
|
A:RFA900
|
4.6
|
20.0
|
0.4
|
C66
|
A:RFB901
|
4.6
|
18.8
|
0.5
|
F58
|
A:RFB901
|
4.7
|
20.2
|
0.5
|
C66
|
A:RFA900
|
4.8
|
20.0
|
0.4
|
CG2
|
A:THR185
|
4.8
|
23.2
|
1.0
|
F58
|
A:RFA900
|
4.8
|
20.8
|
0.4
|
C43
|
A:RFA900
|
4.8
|
22.7
|
0.4
|
C43
|
A:RFB901
|
4.8
|
22.4
|
0.5
|
C69
|
A:RFB901
|
4.9
|
18.8
|
0.5
|
F47
|
A:RFA900
|
4.9
|
22.8
|
0.4
|
F47
|
A:RFB901
|
4.9
|
22.4
|
0.5
|
C69
|
A:RFA900
|
4.9
|
19.9
|
0.4
|
CZ
|
A:PHE87
|
4.9
|
23.7
|
1.0
|
CD1
|
A:LEU244
|
5.0
|
17.2
|
1.0
|
|
Fluorine binding site 7 out
of 32 in 1k2o
Go back to
Fluorine Binding Sites List in 1k2o
Fluorine binding site 7 out
of 32 in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F900
b:20.8
occ:0.41
|
F58
|
A:RFA900
|
0.0
|
20.8
|
0.4
|
F58
|
A:RFB901
|
0.2
|
20.2
|
0.5
|
C54
|
A:RFA900
|
1.4
|
21.1
|
0.4
|
C54
|
A:RFB901
|
1.5
|
20.5
|
0.5
|
C55
|
A:RFA900
|
2.4
|
21.4
|
0.4
|
C53
|
A:RFA900
|
2.4
|
20.9
|
0.4
|
C53
|
A:RFB901
|
2.5
|
20.2
|
0.5
|
C55
|
A:RFB901
|
2.6
|
20.9
|
0.5
|
F59
|
A:RFA900
|
2.7
|
21.2
|
0.4
|
N60
|
A:RFA900
|
2.8
|
20.5
|
0.4
|
F59
|
A:RFB901
|
2.8
|
20.7
|
0.5
|
C61
|
A:RFB901
|
2.9
|
19.0
|
0.5
|
C61
|
A:RFA900
|
2.9
|
20.1
|
0.4
|
N60
|
A:RFB901
|
2.9
|
19.6
|
0.5
|
C63
|
A:RFB901
|
3.2
|
18.9
|
0.5
|
C63
|
A:RFA900
|
3.4
|
20.0
|
0.4
|
CG2
|
A:VAL396
|
3.4
|
14.0
|
1.0
|
CG2
|
A:ILE395
|
3.5
|
15.1
|
1.0
|
O
|
A:HOH1066
|
3.7
|
26.7
|
1.0
|
C52
|
A:RFA900
|
3.7
|
21.1
|
0.4
|
C50
|
A:RFA900
|
3.7
|
21.8
|
0.4
|
CB
|
A:ILE395
|
3.7
|
15.2
|
1.0
|
O
|
A:HOH1234
|
3.8
|
30.2
|
1.0
|
C52
|
A:RFB901
|
3.8
|
20.4
|
0.5
|
O
|
A:HOH1050
|
3.8
|
27.3
|
1.0
|
C50
|
A:RFB901
|
3.9
|
21.3
|
0.5
|
C64
|
A:RFB901
|
4.1
|
18.7
|
0.5
|
C51
|
A:RFA900
|
4.2
|
21.4
|
0.4
|
C64
|
A:RFA900
|
4.3
|
19.8
|
0.4
|
CB
|
A:VAL396
|
4.3
|
14.0
|
1.0
|
C51
|
A:RFB901
|
4.3
|
20.8
|
0.5
|
N
|
A:VAL396
|
4.4
|
13.8
|
1.0
|
C66
|
A:RFA900
|
4.4
|
20.0
|
0.4
|
C66
|
A:RFB901
|
4.4
|
18.8
|
0.5
|
C62
|
A:RFB901
|
4.6
|
18.8
|
0.5
|
C
|
A:ILE395
|
4.6
|
14.4
|
1.0
|
CD1
|
A:ILE395
|
4.6
|
16.7
|
1.0
|
C62
|
A:RFA900
|
4.7
|
20.0
|
0.4
|
CA
|
A:ILE395
|
4.8
|
14.5
|
1.0
|
CG1
|
A:ILE395
|
4.8
|
15.4
|
1.0
|
F57
|
A:RFA900
|
4.8
|
21.0
|
0.4
|
CE1
|
A:PHE87
|
4.8
|
23.7
|
1.0
|
C43
|
A:RFA900
|
4.9
|
22.7
|
0.4
|
F48
|
A:RFA900
|
4.9
|
23.3
|
0.4
|
F57
|
A:RFB901
|
4.9
|
20.3
|
0.5
|
CA
|
A:VAL396
|
4.9
|
14.0
|
1.0
|
|
Fluorine binding site 8 out
of 32 in 1k2o
Go back to
Fluorine Binding Sites List in 1k2o
Fluorine binding site 8 out
of 32 in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F900
b:21.2
occ:0.41
|
F59
|
A:RFA900
|
0.0
|
21.2
|
0.4
|
F59
|
A:RFB901
|
0.2
|
20.7
|
0.5
|
C55
|
A:RFA900
|
1.4
|
21.4
|
0.4
|
C55
|
A:RFB901
|
1.4
|
20.9
|
0.5
|
C54
|
A:RFB901
|
2.4
|
20.5
|
0.5
|
C54
|
A:RFA900
|
2.4
|
21.1
|
0.4
|
C50
|
A:RFA900
|
2.4
|
21.8
|
0.4
|
C50
|
A:RFB901
|
2.6
|
21.3
|
0.5
|
F58
|
A:RFB901
|
2.6
|
20.2
|
0.5
|
F58
|
A:RFA900
|
2.7
|
20.8
|
0.4
|
F48
|
A:RFA900
|
2.8
|
23.3
|
0.4
|
C43
|
A:RFA900
|
2.9
|
22.7
|
0.4
|
F48
|
A:RFB901
|
3.0
|
23.3
|
0.5
|
C44
|
A:RFA900
|
3.0
|
23.1
|
0.4
|
C43
|
A:RFB901
|
3.1
|
22.4
|
0.5
|
C44
|
A:RFB901
|
3.2
|
22.9
|
0.5
|
O
|
A:HOH1234
|
3.5
|
30.2
|
1.0
|
C53
|
A:RFA900
|
3.7
|
20.9
|
0.4
|
C53
|
A:RFB901
|
3.7
|
20.2
|
0.5
|
C51
|
A:RFA900
|
3.7
|
21.4
|
0.4
|
C51
|
A:RFB901
|
3.8
|
20.8
|
0.5
|
O
|
A:HOH1021
|
3.9
|
22.9
|
1.0
|
C42
|
A:RFA900
|
4.0
|
23.0
|
0.4
|
O
|
A:HOH1066
|
4.1
|
26.7
|
1.0
|
CD1
|
A:ILE395
|
4.1
|
16.7
|
1.0
|
C42
|
A:RFB901
|
4.1
|
22.6
|
0.5
|
C52
|
A:RFA900
|
4.2
|
21.1
|
0.4
|
C45
|
A:RFA900
|
4.2
|
23.7
|
0.4
|
C52
|
A:RFB901
|
4.2
|
20.4
|
0.5
|
CB
|
A:ILE395
|
4.3
|
15.2
|
1.0
|
C45
|
A:RFB901
|
4.4
|
23.5
|
0.5
|
CE1
|
A:PHE87
|
4.4
|
23.7
|
1.0
|
F47
|
A:RFA900
|
4.6
|
22.8
|
0.4
|
CG1
|
A:ILE395
|
4.7
|
15.4
|
1.0
|
F47
|
A:RFB901
|
4.7
|
22.4
|
0.5
|
N60
|
A:RFA900
|
4.8
|
20.5
|
0.4
|
N60
|
A:RFB901
|
4.8
|
19.6
|
0.5
|
CG2
|
A:ILE395
|
4.8
|
15.1
|
1.0
|
F56
|
A:RFA900
|
4.9
|
21.3
|
0.4
|
F49
|
A:RFA900
|
4.9
|
23.6
|
0.4
|
C41
|
A:RFA900
|
4.9
|
23.6
|
0.4
|
CD1
|
A:PHE87
|
5.0
|
23.5
|
1.0
|
C40
|
A:RFA900
|
5.0
|
24.1
|
0.4
|
|
Fluorine binding site 9 out
of 32 in 1k2o
Go back to
Fluorine Binding Sites List in 1k2o
Fluorine binding site 9 out
of 32 in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:23.0
occ:0.53
|
F46
|
A:RFB901
|
0.0
|
23.0
|
0.5
|
F46
|
A:RFA900
|
0.2
|
23.4
|
0.4
|
C41
|
A:RFB901
|
1.4
|
23.2
|
0.5
|
C41
|
A:RFA900
|
1.5
|
23.6
|
0.4
|
C40
|
A:RFB901
|
2.4
|
23.8
|
0.5
|
C42
|
A:RFB901
|
2.4
|
22.6
|
0.5
|
C42
|
A:RFA900
|
2.5
|
23.0
|
0.4
|
C40
|
A:RFA900
|
2.6
|
24.1
|
0.4
|
F47
|
A:RFB901
|
2.7
|
22.4
|
0.5
|
F47
|
A:RFA900
|
2.8
|
22.8
|
0.4
|
C39
|
A:RFB901
|
2.8
|
25.2
|
0.5
|
C
|
A:GLY93
|
2.9
|
26.4
|
1.0
|
C39
|
A:RFA900
|
3.0
|
25.7
|
0.4
|
O
|
A:GLY93
|
3.0
|
26.4
|
1.0
|
N
|
A:GLU94
|
3.4
|
26.0
|
1.0
|
CA
|
A:GLY93
|
3.4
|
26.7
|
1.0
|
CB
|
A:GLU94
|
3.4
|
26.3
|
1.0
|
CG
|
A:PHE193
|
3.5
|
21.8
|
1.0
|
CD1
|
A:PHE193
|
3.6
|
21.8
|
1.0
|
C45
|
A:RFB901
|
3.7
|
23.5
|
0.5
|
C43
|
A:RFB901
|
3.7
|
22.4
|
0.5
|
O
|
A:ALA92
|
3.7
|
27.7
|
1.0
|
CD2
|
A:PHE193
|
3.7
|
21.9
|
1.0
|
CE1
|
A:PHE193
|
3.8
|
21.4
|
1.0
|
C22
|
A:RFB901
|
3.8
|
26.5
|
0.5
|
C43
|
A:RFA900
|
3.8
|
22.7
|
0.4
|
C45
|
A:RFA900
|
3.8
|
23.7
|
0.4
|
CG
|
A:GLU94
|
3.9
|
27.2
|
1.0
|
CA
|
A:GLU94
|
3.9
|
25.6
|
1.0
|
C23
|
A:RFB901
|
3.9
|
27.0
|
0.5
|
CE2
|
A:PHE193
|
3.9
|
21.9
|
1.0
|
C22
|
A:RFA900
|
4.0
|
27.2
|
0.4
|
CZ
|
A:PHE193
|
4.0
|
21.7
|
1.0
|
C23
|
A:RFA900
|
4.0
|
27.8
|
0.4
|
C44
|
A:RFB901
|
4.2
|
22.9
|
0.5
|
CB
|
A:PHE193
|
4.2
|
22.1
|
1.0
|
CD
|
A:GLU94
|
4.2
|
27.9
|
1.0
|
N
|
A:GLY93
|
4.2
|
27.1
|
1.0
|
OE1
|
A:GLU94
|
4.3
|
28.3
|
1.0
|
C
|
A:ALA92
|
4.3
|
27.6
|
1.0
|
C44
|
A:RFA900
|
4.3
|
23.1
|
0.4
|
N
|
A:ALA95
|
4.6
|
24.4
|
1.0
|
C
|
A:GLU94
|
4.6
|
25.1
|
1.0
|
F49
|
A:RFB901
|
4.8
|
23.7
|
0.5
|
C50
|
A:RFB901
|
4.8
|
21.3
|
0.5
|
OE2
|
A:GLU94
|
4.9
|
28.1
|
1.0
|
F56
|
A:RFA900
|
4.9
|
21.3
|
0.4
|
F56
|
A:RFB901
|
4.9
|
20.7
|
0.5
|
F49
|
A:RFA900
|
5.0
|
23.6
|
0.4
|
C50
|
A:RFA900
|
5.0
|
21.8
|
0.4
|
|
Fluorine binding site 10 out
of 32 in 1k2o
Go back to
Fluorine Binding Sites List in 1k2o
Fluorine binding site 10 out
of 32 in the Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Cytochrome P450CAM with Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:22.4
occ:0.53
|
F47
|
A:RFB901
|
0.0
|
22.4
|
0.5
|
F47
|
A:RFA900
|
0.1
|
22.8
|
0.4
|
C42
|
A:RFB901
|
1.4
|
22.6
|
0.5
|
C42
|
A:RFA900
|
1.4
|
23.0
|
0.4
|
C41
|
A:RFB901
|
2.4
|
23.2
|
0.5
|
C41
|
A:RFA900
|
2.4
|
23.6
|
0.4
|
C43
|
A:RFB901
|
2.4
|
22.4
|
0.5
|
C43
|
A:RFA900
|
2.5
|
22.7
|
0.4
|
F46
|
A:RFA900
|
2.7
|
23.4
|
0.4
|
F46
|
A:RFB901
|
2.7
|
23.0
|
0.5
|
F56
|
A:RFA900
|
2.8
|
21.3
|
0.4
|
C50
|
A:RFB901
|
2.8
|
21.3
|
0.5
|
F56
|
A:RFB901
|
2.9
|
20.7
|
0.5
|
C50
|
A:RFA900
|
3.0
|
21.8
|
0.4
|
C51
|
A:RFB901
|
3.1
|
20.8
|
0.5
|
C51
|
A:RFA900
|
3.1
|
21.4
|
0.4
|
O
|
A:GLY93
|
3.4
|
26.4
|
1.0
|
CA
|
A:GLY93
|
3.4
|
26.7
|
1.0
|
CE1
|
A:PHE87
|
3.5
|
23.7
|
1.0
|
C40
|
A:RFB901
|
3.6
|
23.8
|
0.5
|
CZ
|
A:PHE193
|
3.7
|
21.7
|
1.0
|
CD2
|
A:TYR96
|
3.7
|
18.5
|
1.0
|
C40
|
A:RFA900
|
3.7
|
24.1
|
0.4
|
CE1
|
A:PHE193
|
3.7
|
21.4
|
1.0
|
C44
|
A:RFB901
|
3.7
|
22.9
|
0.5
|
C
|
A:GLY93
|
3.7
|
26.4
|
1.0
|
C44
|
A:RFA900
|
3.8
|
23.1
|
0.4
|
CZ
|
A:PHE87
|
3.9
|
23.7
|
1.0
|
C55
|
A:RFB901
|
3.9
|
20.9
|
0.5
|
CB
|
A:TYR96
|
4.0
|
19.9
|
1.0
|
C55
|
A:RFA900
|
4.1
|
21.4
|
0.4
|
C45
|
A:RFB901
|
4.2
|
23.5
|
0.5
|
C52
|
A:RFB901
|
4.2
|
20.4
|
0.5
|
O
|
A:ALA92
|
4.2
|
27.7
|
1.0
|
C52
|
A:RFA900
|
4.2
|
21.1
|
0.4
|
C45
|
A:RFA900
|
4.2
|
23.7
|
0.4
|
CG
|
A:TYR96
|
4.3
|
19.0
|
1.0
|
CD1
|
A:PHE87
|
4.3
|
23.5
|
1.0
|
CE2
|
A:PHE193
|
4.3
|
21.9
|
1.0
|
CD1
|
A:PHE193
|
4.4
|
21.8
|
1.0
|
F59
|
A:RFB901
|
4.5
|
20.7
|
0.5
|
N
|
A:GLY93
|
4.6
|
27.1
|
1.0
|
CE2
|
A:TYR96
|
4.6
|
18.2
|
1.0
|
F59
|
A:RFA900
|
4.7
|
21.2
|
0.4
|
C39
|
A:RFB901
|
4.8
|
25.2
|
0.5
|
F48
|
A:RFB901
|
4.8
|
23.3
|
0.5
|
N
|
A:GLU94
|
4.9
|
26.0
|
1.0
|
C
|
A:ALA92
|
4.9
|
27.6
|
1.0
|
C54
|
A:RFB901
|
4.9
|
20.5
|
0.5
|
F57
|
A:RFA900
|
4.9
|
21.0
|
0.4
|
CE2
|
A:PHE87
|
4.9
|
23.6
|
1.0
|
C39
|
A:RFA900
|
4.9
|
25.7
|
0.4
|
CA
|
A:TYR96
|
4.9
|
20.6
|
1.0
|
F57
|
A:RFB901
|
4.9
|
20.3
|
0.5
|
F48
|
A:RFA900
|
4.9
|
23.3
|
0.4
|
CD2
|
A:PHE193
|
5.0
|
21.9
|
1.0
|
C53
|
A:RFB901
|
5.0
|
20.2
|
0.5
|
CG
|
A:PHE193
|
5.0
|
21.8
|
1.0
|
C54
|
A:RFA900
|
5.0
|
21.1
|
0.4
|
|
Reference:
A.R.Dunn,
I.J.Dmochowski,
A.M.Bilwes,
H.B.Gray,
B.R.Crane.
Probing the Open State of Cytochrome P450CAM with Ruthenium-Linker Substrates. Proc.Natl.Acad.Sci.Usa V. 98 12420 2001.
ISSN: ISSN 0027-8424
PubMed: 11606730
DOI: 10.1073/PNAS.221297998
Page generated: Wed Jul 31 11:40:59 2024
|