Fluorine in PDB 1k5g: Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Protein crystallography data
The structure of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex, PDB code: 1k5g
was solved by
M.J.Seewald,
C.Koerner,
A.Wittinghofer,
I.R.Vetter,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
31.00 /
3.10
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
99.930,
102.568,
118.850,
71.67,
79.09,
67.81
|
R / Rfree (%)
|
25 /
26.9
|
Other elements in 1k5g:
The structure of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
(pdb code 1k5g). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex, PDB code: 1k5g:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 1k5g
Go back to
Fluorine Binding Sites List in 1k5g
Fluorine binding site 1 out
of 12 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1252
b:57.3
occ:1.00
|
F1
|
A:AF31252
|
0.0
|
57.3
|
1.0
|
AL
|
A:AF31252
|
1.7
|
57.4
|
1.0
|
N
|
A:THR42
|
2.4
|
34.6
|
1.0
|
MG
|
A:MG1251
|
2.6
|
31.7
|
1.0
|
F3
|
A:AF31252
|
2.7
|
57.5
|
1.0
|
F2
|
A:AF31252
|
3.0
|
57.7
|
1.0
|
CB
|
A:THR42
|
3.2
|
33.6
|
1.0
|
CA
|
A:THR42
|
3.2
|
34.6
|
1.0
|
C
|
A:ALA41
|
3.3
|
24.4
|
1.0
|
CA
|
A:ALA41
|
3.3
|
24.4
|
1.0
|
OG1
|
A:THR42
|
3.4
|
33.6
|
1.0
|
O2B
|
A:GDP1250
|
3.5
|
43.3
|
1.0
|
O
|
A:THR42
|
3.8
|
34.6
|
1.0
|
C
|
A:THR42
|
3.8
|
34.6
|
1.0
|
CB
|
A:ALA41
|
4.0
|
10.4
|
1.0
|
O3B
|
A:GDP1250
|
4.3
|
43.3
|
1.0
|
O
|
A:ALA41
|
4.4
|
24.4
|
1.0
|
PB
|
A:GDP1250
|
4.5
|
43.3
|
1.0
|
OE1
|
A:GLN69
|
4.5
|
42.7
|
1.0
|
CA
|
A:ALA67
|
4.5
|
25.9
|
1.0
|
N
|
A:ALA41
|
4.6
|
24.4
|
1.0
|
N
|
A:GLY68
|
4.6
|
39.6
|
1.0
|
CG2
|
A:THR42
|
4.6
|
33.6
|
1.0
|
O
|
A:VAL40
|
4.7
|
26.0
|
1.0
|
O
|
A:THR66
|
4.8
|
38.6
|
1.0
|
CB
|
A:ALA67
|
4.9
|
1.0
|
1.0
|
OH
|
A:TYR39
|
4.9
|
40.6
|
1.0
|
CE1
|
A:TYR39
|
4.9
|
40.6
|
1.0
|
N
|
A:LEU43
|
5.0
|
22.1
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 1k5g
Go back to
Fluorine Binding Sites List in 1k5g
Fluorine binding site 2 out
of 12 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1252
b:57.7
occ:1.00
|
F2
|
A:AF31252
|
0.0
|
57.7
|
1.0
|
AL
|
A:AF31252
|
1.7
|
57.4
|
1.0
|
OH
|
A:TYR39
|
2.8
|
40.6
|
1.0
|
F3
|
A:AF31252
|
2.9
|
57.5
|
1.0
|
NE2
|
A:GLN69
|
3.0
|
42.5
|
1.0
|
F1
|
A:AF31252
|
3.0
|
57.3
|
1.0
|
CA
|
A:GLY19
|
3.1
|
42.9
|
1.0
|
OE1
|
A:GLN69
|
3.2
|
42.7
|
1.0
|
CD
|
A:GLN69
|
3.5
|
42.5
|
1.0
|
N
|
A:GLY20
|
3.6
|
63.3
|
1.0
|
C
|
A:GLY19
|
3.7
|
42.9
|
1.0
|
O3B
|
A:GDP1250
|
3.8
|
43.3
|
1.0
|
CZ
|
A:TYR39
|
3.9
|
40.6
|
1.0
|
CE1
|
A:TYR39
|
4.1
|
40.6
|
1.0
|
N
|
A:GLY19
|
4.3
|
42.9
|
1.0
|
N
|
A:GLY68
|
4.3
|
39.6
|
1.0
|
CB
|
A:ALA41
|
4.5
|
10.4
|
1.0
|
CA
|
C:GLY133
|
4.5
|
27.6
|
1.0
|
CA
|
A:ALA41
|
4.6
|
24.4
|
1.0
|
CA
|
A:GLY68
|
4.6
|
39.6
|
1.0
|
CA
|
A:GLY20
|
4.7
|
63.3
|
1.0
|
O
|
A:GLY19
|
4.8
|
42.9
|
1.0
|
O2B
|
A:GDP1250
|
4.8
|
43.3
|
1.0
|
MG
|
A:MG1251
|
4.8
|
31.7
|
1.0
|
PB
|
A:GDP1250
|
4.9
|
43.3
|
1.0
|
C
|
A:GLY68
|
4.9
|
39.6
|
1.0
|
CG
|
A:GLN69
|
5.0
|
42.1
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 1k5g
Go back to
Fluorine Binding Sites List in 1k5g
Fluorine binding site 3 out
of 12 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1252
b:57.5
occ:1.00
|
F3
|
A:AF31252
|
0.0
|
57.5
|
1.0
|
AL
|
A:AF31252
|
1.6
|
57.4
|
1.0
|
F1
|
A:AF31252
|
2.7
|
57.3
|
1.0
|
O3B
|
A:GDP1250
|
2.9
|
43.3
|
1.0
|
MG
|
A:MG1251
|
2.9
|
31.7
|
1.0
|
F2
|
A:AF31252
|
2.9
|
57.7
|
1.0
|
NZ
|
A:LYS23
|
3.1
|
30.1
|
1.0
|
O2B
|
A:GDP1250
|
3.2
|
43.3
|
1.0
|
CE
|
A:LYS23
|
3.3
|
30.1
|
1.0
|
PB
|
A:GDP1250
|
3.3
|
43.3
|
1.0
|
N
|
A:GLY68
|
3.3
|
39.6
|
1.0
|
O1B
|
A:GDP1250
|
3.4
|
43.3
|
1.0
|
CA
|
A:GLY19
|
3.6
|
42.9
|
1.0
|
O
|
A:THR66
|
4.0
|
38.6
|
1.0
|
CA
|
A:GLY68
|
4.0
|
39.6
|
1.0
|
N
|
A:GLY20
|
4.1
|
63.3
|
1.0
|
C
|
A:ALA67
|
4.3
|
25.9
|
1.0
|
CA
|
A:ALA67
|
4.3
|
25.9
|
1.0
|
C
|
A:GLY19
|
4.4
|
42.9
|
1.0
|
N
|
A:GLY19
|
4.4
|
42.9
|
1.0
|
O
|
A:ASP18
|
4.6
|
41.2
|
1.0
|
CD
|
A:LYS23
|
4.8
|
30.1
|
1.0
|
O3A
|
A:GDP1250
|
4.8
|
43.3
|
1.0
|
C
|
A:ASP18
|
4.8
|
41.2
|
1.0
|
O
|
A:GLY17
|
4.8
|
40.1
|
1.0
|
OG1
|
A:THR42
|
4.8
|
33.6
|
1.0
|
OE1
|
A:GLN69
|
4.9
|
42.7
|
1.0
|
CB
|
A:THR42
|
4.9
|
33.6
|
1.0
|
C
|
A:THR66
|
5.0
|
38.6
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 1k5g
Go back to
Fluorine Binding Sites List in 1k5g
Fluorine binding site 4 out
of 12 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F2252
b:57.3
occ:1.00
|
F1
|
D:AF32252
|
0.0
|
57.3
|
1.0
|
AL
|
D:AF32252
|
1.7
|
57.4
|
1.0
|
MG
|
D:MG2251
|
2.0
|
45.2
|
1.0
|
N
|
D:THR42
|
2.5
|
25.1
|
1.0
|
F3
|
D:AF32252
|
2.7
|
57.5
|
1.0
|
OG1
|
D:THR42
|
2.9
|
2.1
|
1.0
|
O2B
|
D:GDP2250
|
2.9
|
32.0
|
1.0
|
CB
|
D:THR42
|
3.0
|
2.1
|
1.0
|
F2
|
D:AF32252
|
3.0
|
57.7
|
1.0
|
CA
|
D:THR42
|
3.2
|
25.1
|
1.0
|
C
|
D:ALA41
|
3.5
|
27.9
|
1.0
|
CA
|
D:ALA41
|
3.6
|
27.9
|
1.0
|
O3B
|
D:GDP2250
|
3.9
|
32.0
|
1.0
|
PB
|
D:GDP2250
|
3.9
|
32.0
|
1.0
|
O
|
D:THR42
|
4.0
|
25.1
|
1.0
|
C
|
D:THR42
|
4.1
|
25.1
|
1.0
|
CB
|
D:ALA41
|
4.4
|
52.1
|
1.0
|
CG2
|
D:THR42
|
4.4
|
2.1
|
1.0
|
OG1
|
D:THR24
|
4.5
|
24.1
|
1.0
|
O
|
D:VAL40
|
4.6
|
19.9
|
1.0
|
O
|
D:ALA41
|
4.6
|
27.9
|
1.0
|
O1B
|
D:GDP2250
|
4.6
|
32.0
|
1.0
|
O
|
D:THR66
|
4.7
|
23.3
|
1.0
|
N
|
D:ALA41
|
4.7
|
27.9
|
1.0
|
CA
|
D:ALA67
|
4.7
|
36.2
|
1.0
|
CE1
|
D:TYR39
|
4.9
|
60.1
|
1.0
|
N
|
D:GLY68
|
4.9
|
44.9
|
1.0
|
O2A
|
D:GDP2250
|
4.9
|
32.0
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 1k5g
Go back to
Fluorine Binding Sites List in 1k5g
Fluorine binding site 5 out
of 12 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F2252
b:57.7
occ:1.00
|
F2
|
D:AF32252
|
0.0
|
57.7
|
1.0
|
AL
|
D:AF32252
|
1.7
|
57.4
|
1.0
|
F3
|
D:AF32252
|
2.9
|
57.5
|
1.0
|
OH
|
D:TYR39
|
2.9
|
60.1
|
1.0
|
F1
|
D:AF32252
|
3.0
|
57.3
|
1.0
|
OE1
|
D:GLN69
|
3.1
|
42.4
|
1.0
|
NE2
|
D:GLN69
|
3.1
|
42.2
|
1.0
|
CD
|
D:GLN69
|
3.5
|
42.2
|
1.0
|
CA
|
D:GLY19
|
3.8
|
32.7
|
1.0
|
CB
|
D:ALA41
|
3.8
|
52.1
|
1.0
|
CZ
|
D:TYR39
|
4.0
|
60.1
|
1.0
|
CA
|
D:ALA41
|
4.0
|
27.9
|
1.0
|
O3B
|
D:GDP2250
|
4.0
|
32.0
|
1.0
|
CE1
|
D:TYR39
|
4.1
|
60.1
|
1.0
|
N
|
D:GLY20
|
4.1
|
43.9
|
1.0
|
N
|
D:THR42
|
4.4
|
25.1
|
1.0
|
C
|
D:GLY19
|
4.4
|
32.7
|
1.0
|
N
|
D:GLY68
|
4.5
|
44.9
|
1.0
|
CA
|
F:GLY133
|
4.5
|
37.7
|
1.0
|
MG
|
D:MG2251
|
4.7
|
45.2
|
1.0
|
C
|
D:ALA41
|
4.7
|
27.9
|
1.0
|
O2B
|
D:GDP2250
|
4.8
|
32.0
|
1.0
|
CA
|
D:GLY68
|
5.0
|
44.9
|
1.0
|
N
|
D:GLY19
|
5.0
|
32.7
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 1k5g
Go back to
Fluorine Binding Sites List in 1k5g
Fluorine binding site 6 out
of 12 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F2252
b:57.5
occ:1.00
|
F3
|
D:AF32252
|
0.0
|
57.5
|
1.0
|
AL
|
D:AF32252
|
1.6
|
57.4
|
1.0
|
O3B
|
D:GDP2250
|
2.7
|
32.0
|
1.0
|
F1
|
D:AF32252
|
2.7
|
57.3
|
1.0
|
F2
|
D:AF32252
|
2.9
|
57.7
|
1.0
|
NZ
|
D:LYS23
|
3.1
|
26.3
|
1.0
|
MG
|
D:MG2251
|
3.2
|
45.2
|
1.0
|
PB
|
D:GDP2250
|
3.2
|
32.0
|
1.0
|
CA
|
D:GLY19
|
3.3
|
32.7
|
1.0
|
O2B
|
D:GDP2250
|
3.3
|
32.0
|
1.0
|
CE
|
D:LYS23
|
3.4
|
26.3
|
1.0
|
O1B
|
D:GDP2250
|
3.4
|
32.0
|
1.0
|
N
|
D:GLY68
|
3.5
|
44.9
|
1.0
|
N
|
D:GLY20
|
3.7
|
43.9
|
1.0
|
CA
|
D:GLY68
|
4.1
|
44.9
|
1.0
|
C
|
D:GLY19
|
4.1
|
32.7
|
1.0
|
N
|
D:GLY19
|
4.2
|
32.7
|
1.0
|
O
|
D:ASP18
|
4.3
|
23.8
|
1.0
|
O
|
D:THR66
|
4.4
|
23.3
|
1.0
|
C
|
D:ALA67
|
4.5
|
36.2
|
1.0
|
C
|
D:ASP18
|
4.6
|
23.8
|
1.0
|
CA
|
D:ALA67
|
4.6
|
36.2
|
1.0
|
O3A
|
D:GDP2250
|
4.7
|
32.0
|
1.0
|
OE1
|
D:GLN69
|
4.8
|
42.4
|
1.0
|
O
|
D:GLY17
|
4.8
|
27.6
|
1.0
|
OH
|
D:TYR39
|
4.9
|
60.1
|
1.0
|
CD
|
D:LYS23
|
4.9
|
26.3
|
1.0
|
CA
|
D:GLY20
|
5.0
|
43.9
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 1k5g
Go back to
Fluorine Binding Sites List in 1k5g
Fluorine binding site 7 out
of 12 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:F3252
b:57.3
occ:1.00
|
F1
|
G:AF33252
|
0.0
|
57.3
|
1.0
|
AL
|
G:AF33252
|
1.7
|
57.4
|
1.0
|
N
|
G:THR42
|
2.5
|
40.0
|
1.0
|
F3
|
G:AF33252
|
2.7
|
57.5
|
1.0
|
MG
|
G:MG3251
|
2.9
|
44.9
|
1.0
|
CB
|
G:THR42
|
3.0
|
46.2
|
1.0
|
F2
|
G:AF33252
|
3.1
|
57.7
|
1.0
|
CA
|
G:THR42
|
3.1
|
40.0
|
1.0
|
O
|
G:THR42
|
3.2
|
40.0
|
1.0
|
OG1
|
G:THR42
|
3.4
|
46.2
|
1.0
|
C
|
G:THR42
|
3.4
|
40.0
|
1.0
|
C
|
G:ALA41
|
3.6
|
14.8
|
1.0
|
CA
|
G:ALA67
|
3.7
|
42.5
|
1.0
|
CA
|
G:ALA41
|
3.9
|
14.8
|
1.0
|
CB
|
G:ALA67
|
4.0
|
14.2
|
1.0
|
O2B
|
G:GDP3250
|
4.1
|
35.4
|
1.0
|
N
|
G:GLY68
|
4.1
|
42.8
|
1.0
|
OE1
|
G:GLN69
|
4.2
|
55.0
|
1.0
|
O
|
G:THR66
|
4.3
|
29.3
|
1.0
|
CG2
|
G:THR42
|
4.3
|
46.2
|
1.0
|
CB
|
G:ALA41
|
4.3
|
63.6
|
1.0
|
C
|
G:ALA67
|
4.5
|
42.5
|
1.0
|
N
|
G:LEU43
|
4.6
|
42.1
|
1.0
|
O
|
G:ALA41
|
4.6
|
14.8
|
1.0
|
N
|
G:ALA67
|
4.7
|
42.5
|
1.0
|
O3B
|
G:GDP3250
|
4.8
|
35.4
|
1.0
|
C
|
G:THR66
|
4.9
|
29.3
|
1.0
|
PB
|
G:GDP3250
|
5.0
|
35.4
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 1k5g
Go back to
Fluorine Binding Sites List in 1k5g
Fluorine binding site 8 out
of 12 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:F3252
b:57.7
occ:1.00
|
F2
|
G:AF33252
|
0.0
|
57.7
|
1.0
|
AL
|
G:AF33252
|
1.7
|
57.4
|
1.0
|
OH
|
G:TYR39
|
2.6
|
25.3
|
1.0
|
F3
|
G:AF33252
|
2.9
|
57.5
|
1.0
|
F1
|
G:AF33252
|
3.1
|
57.3
|
1.0
|
NE2
|
G:GLN69
|
3.5
|
54.8
|
1.0
|
CZ
|
G:TYR39
|
3.5
|
25.3
|
1.0
|
O3B
|
G:GDP3250
|
3.5
|
35.4
|
1.0
|
CE1
|
G:TYR39
|
3.6
|
25.3
|
1.0
|
CA
|
G:GLY19
|
3.6
|
27.0
|
1.0
|
N
|
G:GLY20
|
3.7
|
57.5
|
1.0
|
OE1
|
G:GLN69
|
3.7
|
55.0
|
1.0
|
CA
|
G:ALA41
|
3.9
|
14.8
|
1.0
|
CB
|
G:ALA41
|
4.0
|
63.6
|
1.0
|
CD
|
G:GLN69
|
4.0
|
54.7
|
1.0
|
C
|
G:GLY19
|
4.1
|
27.0
|
1.0
|
O2B
|
G:GDP3250
|
4.4
|
35.4
|
1.0
|
MG
|
G:MG3251
|
4.4
|
44.9
|
1.0
|
N
|
G:THR42
|
4.4
|
40.0
|
1.0
|
PB
|
G:GDP3250
|
4.6
|
35.4
|
1.0
|
CA
|
I:GLY133
|
4.6
|
34.4
|
1.0
|
CA
|
G:GLY20
|
4.7
|
57.5
|
1.0
|
C
|
G:ALA41
|
4.8
|
14.8
|
1.0
|
N
|
G:GLY68
|
4.8
|
42.8
|
1.0
|
CE2
|
G:TYR39
|
4.8
|
25.3
|
1.0
|
N
|
G:ALA41
|
4.9
|
14.8
|
1.0
|
N
|
G:GLY19
|
4.9
|
27.0
|
1.0
|
CD1
|
G:TYR39
|
4.9
|
25.3
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 1k5g
Go back to
Fluorine Binding Sites List in 1k5g
Fluorine binding site 9 out
of 12 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:F3252
b:57.5
occ:1.00
|
F3
|
G:AF33252
|
0.0
|
57.5
|
1.0
|
AL
|
G:AF33252
|
1.6
|
57.4
|
1.0
|
O3B
|
G:GDP3250
|
2.7
|
35.4
|
1.0
|
F1
|
G:AF33252
|
2.7
|
57.3
|
1.0
|
MG
|
G:MG3251
|
2.8
|
44.9
|
1.0
|
F2
|
G:AF33252
|
2.9
|
57.7
|
1.0
|
O2B
|
G:GDP3250
|
3.1
|
35.4
|
1.0
|
PB
|
G:GDP3250
|
3.1
|
35.4
|
1.0
|
NZ
|
G:LYS23
|
3.2
|
26.7
|
1.0
|
O1B
|
G:GDP3250
|
3.3
|
35.4
|
1.0
|
CE
|
G:LYS23
|
3.3
|
26.7
|
1.0
|
N
|
G:GLY68
|
3.6
|
42.8
|
1.0
|
CA
|
G:GLY19
|
3.6
|
27.0
|
1.0
|
N
|
G:GLY20
|
4.0
|
57.5
|
1.0
|
O
|
G:THR66
|
4.1
|
29.3
|
1.0
|
CA
|
G:GLY68
|
4.3
|
42.8
|
1.0
|
C
|
G:GLY19
|
4.4
|
27.0
|
1.0
|
CA
|
G:ALA67
|
4.5
|
42.5
|
1.0
|
C
|
G:ALA67
|
4.5
|
42.5
|
1.0
|
N
|
G:GLY19
|
4.5
|
27.0
|
1.0
|
O3A
|
G:GDP3250
|
4.6
|
35.4
|
1.0
|
O
|
G:ASP18
|
4.6
|
31.3
|
1.0
|
OG1
|
G:THR42
|
4.7
|
46.2
|
1.0
|
CD
|
G:LYS23
|
4.9
|
26.7
|
1.0
|
N
|
G:THR42
|
4.9
|
40.0
|
1.0
|
CB
|
G:THR42
|
4.9
|
46.2
|
1.0
|
C
|
G:ASP18
|
4.9
|
31.3
|
1.0
|
OE1
|
G:GLN69
|
5.0
|
55.0
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 1k5g
Go back to
Fluorine Binding Sites List in 1k5g
Fluorine binding site 10 out
of 12 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:F4252
b:57.3
occ:1.00
|
F1
|
J:AF34252
|
0.0
|
57.3
|
1.0
|
AL
|
J:AF34252
|
1.7
|
57.4
|
1.0
|
MG
|
J:MG4251
|
2.3
|
33.0
|
1.0
|
F3
|
J:AF34252
|
2.7
|
57.5
|
1.0
|
N
|
J:THR42
|
2.8
|
14.9
|
1.0
|
CB
|
J:THR42
|
2.9
|
20.4
|
1.0
|
F2
|
J:AF34252
|
3.1
|
57.7
|
1.0
|
OG1
|
J:THR42
|
3.2
|
20.4
|
1.0
|
CA
|
J:THR42
|
3.3
|
14.9
|
1.0
|
O2B
|
J:GDP4250
|
3.5
|
29.1
|
1.0
|
O
|
J:THR42
|
3.6
|
14.9
|
1.0
|
C
|
J:THR42
|
3.8
|
14.9
|
1.0
|
C
|
J:ALA41
|
3.9
|
12.5
|
1.0
|
CA
|
J:ALA67
|
3.9
|
27.0
|
1.0
|
O
|
J:THR66
|
4.0
|
28.0
|
1.0
|
CA
|
J:ALA41
|
4.1
|
12.5
|
1.0
|
N
|
J:GLY68
|
4.1
|
34.3
|
1.0
|
CG2
|
J:THR42
|
4.3
|
20.4
|
1.0
|
O3B
|
J:GDP4250
|
4.3
|
29.1
|
1.0
|
CB
|
J:ALA67
|
4.3
|
60.3
|
1.0
|
PB
|
J:GDP4250
|
4.4
|
29.1
|
1.0
|
C
|
J:ALA67
|
4.6
|
27.0
|
1.0
|
OE1
|
J:GLN69
|
4.7
|
45.1
|
1.0
|
C
|
J:THR66
|
4.7
|
28.0
|
1.0
|
N
|
J:ALA67
|
4.7
|
27.0
|
1.0
|
CB
|
J:ALA41
|
4.7
|
19.7
|
1.0
|
O1B
|
J:GDP4250
|
4.9
|
29.1
|
1.0
|
CE
|
J:LYS23
|
4.9
|
28.9
|
1.0
|
O
|
J:ALA41
|
5.0
|
12.5
|
1.0
|
|
Reference:
M.J.Seewald,
C.Korner,
A.Wittinghofer,
I.R.Vetter.
Rangap Mediates Gtp Hydrolysis Without An Arginine Finger. Nature V. 415 662 2002.
ISSN: ISSN 0028-0836
PubMed: 11832950
DOI: 10.1038/415662A
Page generated: Wed Jul 31 11:41:00 2024
|