Fluorine in PDB 1krx: Solution Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structures Incorporating Active Site Contacts
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Solution Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structures Incorporating Active Site Contacts
(pdb code 1krx). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Solution Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structures Incorporating Active Site Contacts, PDB code: 1krx:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 1krx
Go back to
Fluorine Binding Sites List in 1krx
Fluorine binding site 1 out
of 3 in the Solution Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structures Incorporating Active Site Contacts
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Solution Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structures Incorporating Active Site Contacts within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F125
b:0.0
occ:1.00
|
F1
|
A:BEF125
|
0.0
|
0.0
|
1.0
|
BE
|
A:BEF125
|
1.5
|
0.0
|
1.0
|
HZ2
|
A:LYS104
|
2.1
|
0.0
|
1.0
|
HZ1
|
A:LYS104
|
2.2
|
0.0
|
1.0
|
F2
|
A:BEF125
|
2.4
|
0.0
|
1.0
|
F3
|
A:BEF125
|
2.4
|
0.0
|
1.0
|
OD1
|
A:ASP54
|
2.5
|
0.0
|
1.0
|
NZ
|
A:LYS104
|
2.5
|
0.0
|
1.0
|
HZ3
|
A:LYS104
|
3.0
|
0.0
|
1.0
|
OD1
|
A:ASP10
|
3.0
|
0.0
|
1.0
|
OD2
|
A:ASP54
|
3.2
|
0.0
|
1.0
|
CG
|
A:ASP54
|
3.2
|
0.0
|
1.0
|
HG3
|
A:MET81
|
3.4
|
0.0
|
1.0
|
HD3
|
A:LYS104
|
3.6
|
0.0
|
1.0
|
OD2
|
A:ASP10
|
3.7
|
0.0
|
1.0
|
CG
|
A:ASP10
|
3.7
|
0.0
|
1.0
|
CE
|
A:LYS104
|
3.8
|
0.0
|
1.0
|
H
|
A:ILE55
|
3.8
|
0.0
|
1.0
|
HB3
|
A:ARG56
|
4.1
|
0.0
|
1.0
|
CD
|
A:LYS104
|
4.1
|
0.0
|
1.0
|
HB2
|
A:ARG56
|
4.1
|
0.0
|
1.0
|
HD2
|
A:LYS104
|
4.2
|
0.0
|
1.0
|
HG1
|
A:THR82
|
4.2
|
0.0
|
1.0
|
CG
|
A:MET81
|
4.4
|
0.0
|
1.0
|
HE2
|
A:LYS104
|
4.5
|
0.0
|
1.0
|
HE3
|
A:LYS104
|
4.5
|
0.0
|
1.0
|
HB2
|
A:MET81
|
4.6
|
0.0
|
1.0
|
HG2
|
A:MET81
|
4.6
|
0.0
|
1.0
|
CB
|
A:ARG56
|
4.6
|
0.0
|
1.0
|
HD3
|
A:ARG56
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASP54
|
4.7
|
0.0
|
1.0
|
H
|
A:ASP11
|
4.7
|
0.0
|
1.0
|
HG22
|
A:ILE55
|
4.8
|
0.0
|
1.0
|
HA
|
A:ASP54
|
4.8
|
0.0
|
1.0
|
N
|
A:ILE55
|
4.8
|
0.0
|
1.0
|
HB2
|
A:ASP11
|
4.9
|
0.0
|
1.0
|
HA
|
A:ASP10
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 1krx
Go back to
Fluorine Binding Sites List in 1krx
Fluorine binding site 2 out
of 3 in the Solution Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structures Incorporating Active Site Contacts
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Solution Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structures Incorporating Active Site Contacts within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F125
b:0.0
occ:1.00
|
F2
|
A:BEF125
|
0.0
|
0.0
|
1.0
|
BE
|
A:BEF125
|
1.5
|
0.0
|
1.0
|
HG1
|
A:THR82
|
2.1
|
0.0
|
1.0
|
HZ2
|
A:LYS104
|
2.2
|
0.0
|
1.0
|
F3
|
A:BEF125
|
2.4
|
0.0
|
1.0
|
F1
|
A:BEF125
|
2.4
|
0.0
|
1.0
|
HG3
|
A:MET81
|
2.5
|
0.0
|
1.0
|
OD1
|
A:ASP54
|
2.5
|
0.0
|
1.0
|
HG22
|
A:ILE55
|
2.6
|
0.0
|
1.0
|
H
|
A:ILE55
|
2.8
|
0.0
|
1.0
|
HG2
|
A:MET81
|
2.9
|
0.0
|
1.0
|
HG23
|
A:ILE55
|
2.9
|
0.0
|
1.0
|
OG1
|
A:THR82
|
3.0
|
0.0
|
1.0
|
HB2
|
A:MET81
|
3.0
|
0.0
|
1.0
|
CG
|
A:MET81
|
3.0
|
0.0
|
1.0
|
NZ
|
A:LYS104
|
3.2
|
0.0
|
1.0
|
CG2
|
A:ILE55
|
3.3
|
0.0
|
1.0
|
HD2
|
A:LYS104
|
3.4
|
0.0
|
1.0
|
CB
|
A:MET81
|
3.5
|
0.0
|
1.0
|
HZ1
|
A:LYS104
|
3.6
|
0.0
|
1.0
|
N
|
A:ILE55
|
3.6
|
0.0
|
1.0
|
CG
|
A:ASP54
|
3.6
|
0.0
|
1.0
|
HZ3
|
A:LYS104
|
3.8
|
0.0
|
1.0
|
HB
|
A:THR82
|
3.8
|
0.0
|
1.0
|
HD3
|
A:LYS104
|
3.9
|
0.0
|
1.0
|
HA
|
A:ASP54
|
3.9
|
0.0
|
1.0
|
HB2
|
A:ARG56
|
3.9
|
0.0
|
1.0
|
CD
|
A:LYS104
|
3.9
|
0.0
|
1.0
|
HG21
|
A:ILE55
|
3.9
|
0.0
|
1.0
|
O
|
A:ILE55
|
3.9
|
0.0
|
1.0
|
CB
|
A:THR82
|
4.0
|
0.0
|
1.0
|
CE
|
A:LYS104
|
4.0
|
0.0
|
1.0
|
C
|
A:ILE55
|
4.1
|
0.0
|
1.0
|
HE3
|
A:LYS104
|
4.2
|
0.0
|
1.0
|
CA
|
A:ILE55
|
4.2
|
0.0
|
1.0
|
N
|
A:THR82
|
4.2
|
0.0
|
1.0
|
OD2
|
A:ASP54
|
4.3
|
0.0
|
1.0
|
H
|
A:THR82
|
4.3
|
0.0
|
1.0
|
C
|
A:MET81
|
4.3
|
0.0
|
1.0
|
CB
|
A:ILE55
|
4.4
|
0.0
|
1.0
|
HB3
|
A:MET81
|
4.4
|
0.0
|
1.0
|
CA
|
A:MET81
|
4.4
|
0.0
|
1.0
|
H
|
A:MET81
|
4.4
|
0.0
|
1.0
|
C
|
A:ASP54
|
4.4
|
0.0
|
1.0
|
OD2
|
A:ASP10
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASP54
|
4.5
|
0.0
|
1.0
|
HA
|
A:LYS104
|
4.6
|
0.0
|
1.0
|
OD1
|
A:ASP10
|
4.6
|
0.0
|
1.0
|
CB
|
A:ASP54
|
4.7
|
0.0
|
1.0
|
SD
|
A:MET81
|
4.7
|
0.0
|
1.0
|
O
|
A:MET81
|
4.7
|
0.0
|
1.0
|
HB3
|
A:ARG56
|
4.7
|
0.0
|
1.0
|
HE1
|
A:MET81
|
4.8
|
0.0
|
1.0
|
CA
|
A:THR82
|
4.8
|
0.0
|
1.0
|
CB
|
A:ARG56
|
4.8
|
0.0
|
1.0
|
N
|
A:MET81
|
4.9
|
0.0
|
1.0
|
CG
|
A:ASP10
|
4.9
|
0.0
|
1.0
|
N
|
A:ARG56
|
4.9
|
0.0
|
1.0
|
HG22
|
A:ILE80
|
4.9
|
0.0
|
1.0
|
HB
|
A:ILE55
|
5.0
|
0.0
|
1.0
|
HE2
|
A:LYS104
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 1krx
Go back to
Fluorine Binding Sites List in 1krx
Fluorine binding site 3 out
of 3 in the Solution Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structures Incorporating Active Site Contacts
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Solution Structure of Beryllofluoride-Activated Ntrc Receiver Domain: Model Structures Incorporating Active Site Contacts within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F125
b:0.0
occ:1.00
|
F3
|
A:BEF125
|
0.0
|
0.0
|
1.0
|
BE
|
A:BEF125
|
1.5
|
0.0
|
1.0
|
H
|
A:ILE55
|
2.2
|
0.0
|
1.0
|
HB2
|
A:ARG56
|
2.2
|
0.0
|
1.0
|
F2
|
A:BEF125
|
2.4
|
0.0
|
1.0
|
F1
|
A:BEF125
|
2.4
|
0.0
|
1.0
|
HB3
|
A:ARG56
|
2.5
|
0.0
|
1.0
|
OD1
|
A:ASP54
|
2.5
|
0.0
|
1.0
|
CB
|
A:ARG56
|
2.7
|
0.0
|
1.0
|
CG
|
A:ASP54
|
2.8
|
0.0
|
1.0
|
OD2
|
A:ASP54
|
2.8
|
0.0
|
1.0
|
C
|
A:ILE55
|
2.9
|
0.0
|
1.0
|
N
|
A:ILE55
|
3.0
|
0.0
|
1.0
|
N
|
A:ARG56
|
3.0
|
0.0
|
1.0
|
O
|
A:ILE55
|
3.1
|
0.0
|
1.0
|
HG22
|
A:ILE55
|
3.3
|
0.0
|
1.0
|
CA
|
A:ARG56
|
3.5
|
0.0
|
1.0
|
H
|
A:ARG56
|
3.5
|
0.0
|
1.0
|
CA
|
A:ILE55
|
3.5
|
0.0
|
1.0
|
HD22
|
A:ASN35
|
3.8
|
0.0
|
1.0
|
HZ2
|
A:LYS104
|
3.9
|
0.0
|
1.0
|
HG1
|
A:THR82
|
3.9
|
0.0
|
1.0
|
HD3
|
A:ARG56
|
4.0
|
0.0
|
1.0
|
CB
|
A:ASP54
|
4.0
|
0.0
|
1.0
|
HG23
|
A:ILE55
|
4.0
|
0.0
|
1.0
|
CG
|
A:ARG56
|
4.1
|
0.0
|
1.0
|
CG2
|
A:ILE55
|
4.1
|
0.0
|
1.0
|
C
|
A:ASP54
|
4.2
|
0.0
|
1.0
|
HG3
|
A:MET81
|
4.2
|
0.0
|
1.0
|
HB3
|
A:ASP54
|
4.2
|
0.0
|
1.0
|
HG3
|
A:ARG56
|
4.2
|
0.0
|
1.0
|
HA
|
A:ARG56
|
4.3
|
0.0
|
1.0
|
HA
|
A:ILE55
|
4.3
|
0.0
|
1.0
|
C
|
A:ARG56
|
4.3
|
0.0
|
1.0
|
HA
|
A:ASP54
|
4.4
|
0.0
|
1.0
|
OD1
|
A:ASP10
|
4.4
|
0.0
|
1.0
|
CB
|
A:ILE55
|
4.4
|
0.0
|
1.0
|
CA
|
A:ASP54
|
4.4
|
0.0
|
1.0
|
HG2
|
A:MET81
|
4.5
|
0.0
|
1.0
|
O
|
A:ARG56
|
4.5
|
0.0
|
1.0
|
HZ1
|
A:LYS104
|
4.5
|
0.0
|
1.0
|
CD
|
A:ARG56
|
4.6
|
0.0
|
1.0
|
NZ
|
A:LYS104
|
4.7
|
0.0
|
1.0
|
ND2
|
A:ASN35
|
4.7
|
0.0
|
1.0
|
CG
|
A:MET81
|
4.9
|
0.0
|
1.0
|
HG2
|
A:ARG56
|
4.9
|
0.0
|
1.0
|
HB2
|
A:ASP54
|
4.9
|
0.0
|
1.0
|
OG1
|
A:THR82
|
4.9
|
0.0
|
1.0
|
HB
|
A:THR82
|
5.0
|
0.0
|
1.0
|
|
Reference:
C.A.Hastings,
S.-Y.Lee,
H.S.Cho,
D.Yan,
S.Kustu,
D.E.Wemmer.
High-Resolution Solution Structure of the Beryllofluoride-Activated Ntrc Receiver Domain Biochemistry V. 42 9081 2003.
ISSN: ISSN 0006-2960
PubMed: 12885241
DOI: 10.1021/BI0273866
Page generated: Wed Jul 31 11:45:59 2024
|