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Fluorine in PDB 1mih: A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey

Protein crystallography data

The structure of A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey, PDB code: 1mih was solved by R.E.Silversmith, G.P.Guanga, L.Betts, C.Chu, R.Zhao, R.B.Bourret, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.00 / 2.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.504, 53.615, 160.890, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 27.7

Other elements in 1mih:

The structure of A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey (pdb code 1mih). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey, PDB code: 1mih:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 1mih

Go back to Fluorine Binding Sites List in 1mih
Fluorine binding site 1 out of 6 in the A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F130

b:30.4
occ:1.00
 F1 A:BEF130 0.0 30.4 1.0
BE A:BEF130 1.5 31.3 1.0
MN A:MN201 2.1 45.8 1.0
F2 A:BEF130 2.5 33.0 1.0
F3 A:BEF130 2.6 32.1 1.0
OD2 A:ASP57 2.9 26.5 1.0
OD1 A:ASP57 2.9 29.2 1.0
O A:ARG59 3.0 34.8 1.0
O A:HOH405 3.2 22.0 1.0
CG A:ASP57 3.3 28.2 1.0
CB A:ARG59 3.3 35.5 1.0
N A:ARG59 3.6 34.5 1.0
CA A:ARG59 3.7 35.7 1.0
C A:ARG59 3.8 35.2 1.0
CG A:ARG59 4.0 42.4 1.0
OD1 A:ASP13 4.1 38.7 1.0
NZ A:LYS109 4.4 30.5 1.0
N A:TRP58 4.6 31.4 1.0
C A:TRP58 4.6 34.1 1.0
CB A:ASP57 4.8 27.8 1.0

Fluorine binding site 2 out of 6 in 1mih

Go back to Fluorine Binding Sites List in 1mih
Fluorine binding site 2 out of 6 in the A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F130

b:33.0
occ:1.00
 F2 A:BEF130 0.0 33.0 1.0
BE A:BEF130 1.6 31.3 1.0
OD1 A:ASP57 2.4 29.2 1.0
F1 A:BEF130 2.5 30.4 1.0
F3 A:BEF130 2.6 32.1 1.0
OG1 A:THR87 2.8 24.1 1.0
N A:ARG59 3.0 34.5 1.0
N A:TRP58 3.2 31.4 1.0
CB A:TRP58 3.3 34.0 1.0
CG A:ASP57 3.4 28.2 1.0
CB A:THR87 3.4 26.4 1.0
CA A:TRP58 3.5 32.4 1.0
C A:TRP58 3.7 34.1 1.0
N A:ALA88 3.8 32.8 1.0
OD2 A:ASP57 3.9 26.5 1.0
CG A:ARG59 3.9 42.4 1.0
CB A:ARG59 3.9 35.5 1.0
CA A:THR87 4.0 29.5 1.0
CA A:ARG59 4.0 35.7 1.0
C A:ASP57 4.3 28.8 1.0
MN A:MN201 4.4 45.8 1.0
C A:THR87 4.4 31.9 1.0
O A:ARG59 4.5 34.8 1.0
CG A:TRP58 4.5 35.8 1.0
N A:GLU89 4.6 37.7 1.0
CB A:ASP57 4.6 27.8 1.0
CA A:ASP57 4.7 26.9 1.0
OE1 A:GLU89 4.7 47.0 1.0
NZ A:LYS109 4.7 30.5 1.0
C A:ARG59 4.7 35.2 1.0
CG2 A:THR87 4.8 23.1 1.0
CA A:ALA88 4.8 33.8 1.0
CB A:ALA88 4.9 30.4 1.0
O A:TRP58 5.0 32.0 1.0

Fluorine binding site 3 out of 6 in 1mih

Go back to Fluorine Binding Sites List in 1mih
Fluorine binding site 3 out of 6 in the A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F130

b:32.1
occ:1.00
 F3 A:BEF130 0.0 32.1 1.0
BE A:BEF130 1.6 31.3 1.0
F1 A:BEF130 2.6 30.4 1.0
F2 A:BEF130 2.6 33.0 1.0
NZ A:LYS109 2.6 30.5 1.0
OD1 A:ASP57 2.7 29.2 1.0
CE A:LYS109 3.4 30.8 1.0
N A:ALA88 3.4 32.8 1.0
CG A:ASP57 3.6 28.2 1.0
CB A:ALA88 3.7 30.4 1.0
CD A:LYS109 3.8 28.2 1.0
OD2 A:ASP57 3.9 26.5 1.0
MN A:MN201 4.0 45.8 1.0
CA A:THR87 4.0 29.5 1.0
C A:THR87 4.1 31.9 1.0
CA A:ALA88 4.2 33.8 1.0
OG1 A:THR87 4.2 24.1 1.0
CB A:THR87 4.5 26.4 1.0
CG A:LYS109 4.8 31.2 1.0
O A:VAL86 4.8 29.7 1.0
CB A:ASP57 4.8 27.8 1.0
OD2 A:ASP12 4.9 35.7 1.0
N A:TRP58 4.9 31.4 1.0

Fluorine binding site 4 out of 6 in 1mih

Go back to Fluorine Binding Sites List in 1mih
Fluorine binding site 4 out of 6 in the A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F131

b:30.4
occ:1.00
 F1 B:BEF131 0.0 30.4 1.0
BE B:BEF131 1.5 28.6 1.0
MN B:MN202 1.8 56.0 1.0
OD2 B:ASP57 2.4 29.1 1.0
F3 B:BEF131 2.5 28.3 1.0
F2 B:BEF131 2.5 28.8 1.0
O B:ARG59 2.9 40.0 1.0
O B:HOH404 2.9 22.7 1.0
OD1 B:ASP57 2.9 31.7 1.0
CG B:ASP57 3.0 32.2 1.0
CB B:ARG59 3.4 37.6 1.0
N B:ARG59 3.6 34.3 1.0
C B:ARG59 3.7 37.9 1.0
CA B:ARG59 3.7 36.3 1.0
OD1 B:ASP13 3.8 40.8 1.0
CG B:ARG59 4.1 43.5 1.0
NZ B:LYS109 4.2 33.4 1.0
N B:TRP58 4.4 33.6 1.0
CB B:ASP57 4.5 30.2 1.0
C B:TRP58 4.5 36.7 1.0
CG B:ASP13 4.9 40.0 1.0
OG1 B:THR87 4.9 29.4 1.0
OD1 B:ASP12 5.0 35.6 1.0
N B:MET60 5.0 38.9 1.0
CA B:TRP58 5.0 35.7 1.0

Fluorine binding site 5 out of 6 in 1mih

Go back to Fluorine Binding Sites List in 1mih
Fluorine binding site 5 out of 6 in the A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F131

b:28.8
occ:1.00
 F2 B:BEF131 0.0 28.8 1.0
BE B:BEF131 1.6 28.6 1.0
F3 B:BEF131 2.5 28.3 1.0
F1 B:BEF131 2.5 30.4 1.0
N B:ARG59 2.6 34.3 1.0
OG1 B:THR87 2.6 29.4 1.0
OD1 B:ASP57 2.7 31.7 1.0
N B:TRP58 3.0 33.6 1.0
CB B:TRP58 3.1 39.9 1.0
CA B:TRP58 3.3 35.7 1.0
C B:TRP58 3.3 36.7 1.0
CG B:ASP57 3.4 32.2 1.0
CG B:ARG59 3.4 43.5 1.0
OD2 B:ASP57 3.5 29.1 1.0
CB B:ARG59 3.6 37.6 1.0
CA B:ARG59 3.6 36.3 1.0
CB B:THR87 3.7 28.9 1.0
O B:ARG59 4.2 40.0 1.0
C B:ASP57 4.2 32.8 1.0
N B:ALA88 4.2 33.6 1.0
MN B:MN202 4.3 56.0 1.0
CA B:THR87 4.3 31.1 1.0
C B:ARG59 4.3 37.9 1.0
CG B:TRP58 4.3 43.0 1.0
O B:TRP58 4.5 38.5 1.0
CD B:ARG59 4.6 49.3 1.0
CB B:ASP57 4.6 30.2 1.0
CA B:ASP57 4.7 32.0 1.0
C B:THR87 4.8 32.2 1.0
O B:HOH411 4.9 42.6 1.0
CG2 B:THR87 4.9 27.4 1.0
NE B:ARG59 4.9 52.1 1.0
N B:GLU89 4.9 39.0 1.0
CD1 B:TRP58 4.9 43.1 1.0
O B:HOH404 5.0 22.7 1.0
NZ B:LYS109 5.0 33.4 1.0

Fluorine binding site 6 out of 6 in 1mih

Go back to Fluorine Binding Sites List in 1mih
Fluorine binding site 6 out of 6 in the A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of A Role For Chey Glu 89 in Chez-Mediated Dephosphorylation of the E. Coli Chemotaxis Response Regulator Chey within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F131

b:28.3
occ:1.00
 F3 B:BEF131 0.0 28.3 1.0
BE B:BEF131 1.5 28.6 1.0
F1 B:BEF131 2.5 30.4 1.0
F2 B:BEF131 2.5 28.8 1.0
OD1 B:ASP57 2.8 31.7 1.0
NZ B:LYS109 3.2 33.4 1.0
N B:ALA88 3.2 33.6 1.0
OG1 B:THR87 3.5 29.4 1.0
CB B:ALA88 3.6 34.3 1.0
O B:HOH404 3.6 22.7 1.0
CE B:LYS109 3.7 35.4 1.0
CD B:LYS109 3.7 32.2 1.0
CG B:ASP57 3.7 32.2 1.0
OD2 B:ASP57 3.9 29.1 1.0
CA B:THR87 4.0 31.1 1.0
CA B:ALA88 4.0 35.7 1.0
C B:THR87 4.1 32.2 1.0
MN B:MN202 4.1 56.0 1.0
CB B:THR87 4.3 28.9 1.0
CG B:LYS109 4.8 35.0 1.0
O B:VAL86 4.8 32.0 1.0
N B:TRP58 4.9 33.6 1.0
N B:GLU89 4.9 39.0 1.0
N B:ARG59 4.9 34.3 1.0

Reference:

R.E.Silversmith, G.P.Guanga, L.Betts, C.Chu, R.Zhao, R.B.Bourret. Chez-Mediated Dephosphorylation of the Escherichia Coli Chemotaxis Response Regulator Chey: Role For Chey Glutamate 89. J.Bacteriol. V. 185 1495 2003.
ISSN: ISSN 0021-9193
PubMed: 12591865
DOI: 10.1128/JB.185.5.1495-1502.2003
Page generated: Wed Jul 31 11:54:01 2024

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