Fluorine in PDB 1mnd: Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4
Enzymatic activity of Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4
All present enzymatic activity of Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4:
3.6.1.32;
Protein crystallography data
The structure of Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4, PDB code: 1mnd
was solved by
C.A.Smith,
I.Rayment,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
15.00 /
2.60
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
87.900,
149.000,
153.800,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
24.2 /
n/a
|
Other elements in 1mnd:
The structure of Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4 also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4
(pdb code 1mnd). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4, PDB code: 1mnd:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 1mnd
Go back to
Fluorine Binding Sites List in 1mnd
Fluorine binding site 1 out
of 4 in the Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F999
b:48.6
occ:1.00
|
F1
|
A:ALF999
|
0.0
|
48.6
|
1.0
|
AL
|
A:ALF999
|
1.8
|
35.0
|
1.0
|
F3
|
A:ALF999
|
2.5
|
45.7
|
1.0
|
NZ
|
A:LYS185
|
2.6
|
20.6
|
1.0
|
F4
|
A:ALF999
|
2.6
|
54.9
|
1.0
|
N
|
A:GLY457
|
2.7
|
39.5
|
1.0
|
CA
|
A:GLY457
|
2.9
|
45.3
|
1.0
|
O3B
|
A:ADP998
|
3.0
|
34.2
|
1.0
|
O1B
|
A:ADP998
|
3.2
|
22.3
|
1.0
|
CA
|
A:SER181
|
3.4
|
16.7
|
1.0
|
PB
|
A:ADP998
|
3.6
|
43.6
|
1.0
|
F2
|
A:ALF999
|
3.6
|
43.2
|
1.0
|
O
|
A:HOH1099
|
3.6
|
50.8
|
1.0
|
C
|
A:GLY457
|
3.8
|
22.0
|
1.0
|
O
|
A:GLY457
|
3.9
|
27.8
|
1.0
|
O
|
A:GLU180
|
3.9
|
54.1
|
1.0
|
CE
|
A:LYS185
|
3.9
|
56.8
|
1.0
|
C
|
A:SER456
|
3.9
|
54.9
|
1.0
|
CB
|
A:SER181
|
4.0
|
24.6
|
1.0
|
N
|
A:SER181
|
4.1
|
25.8
|
1.0
|
O2B
|
A:ADP998
|
4.1
|
48.9
|
1.0
|
OG
|
A:SER181
|
4.1
|
38.7
|
1.0
|
N
|
A:GLY182
|
4.1
|
41.0
|
1.0
|
C
|
A:GLU180
|
4.2
|
31.3
|
1.0
|
CA
|
A:SER456
|
4.3
|
25.1
|
1.0
|
O
|
A:GLY179
|
4.3
|
29.4
|
1.0
|
C
|
A:SER181
|
4.4
|
20.9
|
1.0
|
O
|
A:ILE455
|
4.6
|
41.9
|
1.0
|
MG
|
A:MG997
|
4.6
|
42.2
|
1.0
|
N
|
A:PHE458
|
5.0
|
11.2
|
1.0
|
O3A
|
A:ADP998
|
5.0
|
23.1
|
1.0
|
O
|
A:SER456
|
5.0
|
41.9
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 1mnd
Go back to
Fluorine Binding Sites List in 1mnd
Fluorine binding site 2 out
of 4 in the Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F999
b:43.2
occ:1.00
|
F2
|
A:ALF999
|
0.0
|
43.2
|
1.0
|
AL
|
A:ALF999
|
1.8
|
35.0
|
1.0
|
O3B
|
A:ADP998
|
2.4
|
34.2
|
1.0
|
O
|
A:HOH1101
|
2.5
|
41.9
|
1.0
|
F3
|
A:ALF999
|
2.5
|
45.7
|
1.0
|
F4
|
A:ALF999
|
2.6
|
54.9
|
1.0
|
OG
|
A:SER237
|
2.7
|
30.0
|
1.0
|
N
|
A:SER237
|
2.8
|
46.9
|
1.0
|
MG
|
A:MG997
|
3.0
|
42.2
|
1.0
|
OG
|
A:SER236
|
3.1
|
32.6
|
1.0
|
CA
|
A:SER236
|
3.4
|
7.7
|
1.0
|
CB
|
A:SER237
|
3.5
|
33.7
|
1.0
|
F1
|
A:ALF999
|
3.6
|
48.6
|
1.0
|
PB
|
A:ADP998
|
3.6
|
43.6
|
1.0
|
C
|
A:SER236
|
3.7
|
23.2
|
1.0
|
O2B
|
A:ADP998
|
3.7
|
48.9
|
1.0
|
CA
|
A:SER237
|
3.7
|
31.0
|
1.0
|
CB
|
A:SER236
|
3.8
|
60.6
|
1.0
|
O
|
A:ASN235
|
4.0
|
30.5
|
1.0
|
N
|
A:SER236
|
4.4
|
25.4
|
1.0
|
O
|
A:SER237
|
4.5
|
15.5
|
1.0
|
C
|
A:SER237
|
4.5
|
51.5
|
1.0
|
O2A
|
A:ADP998
|
4.6
|
26.4
|
1.0
|
ND2
|
A:ASN233
|
4.6
|
43.7
|
1.0
|
O
|
A:HOH1099
|
4.6
|
50.8
|
1.0
|
C
|
A:ASN235
|
4.6
|
35.4
|
1.0
|
O1B
|
A:ADP998
|
4.7
|
22.3
|
1.0
|
O3A
|
A:ADP998
|
4.7
|
23.1
|
1.0
|
OG
|
A:SER181
|
4.7
|
38.7
|
1.0
|
O
|
A:SER236
|
4.9
|
43.1
|
1.0
|
CG
|
A:ASN233
|
4.9
|
15.9
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 1mnd
Go back to
Fluorine Binding Sites List in 1mnd
Fluorine binding site 3 out
of 4 in the Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F999
b:45.7
occ:1.00
|
F3
|
A:ALF999
|
0.0
|
45.7
|
1.0
|
AL
|
A:ALF999
|
1.8
|
35.0
|
1.0
|
OG
|
A:SER181
|
2.4
|
38.7
|
1.0
|
F1
|
A:ALF999
|
2.5
|
48.6
|
1.0
|
F2
|
A:ALF999
|
2.5
|
43.2
|
1.0
|
O3B
|
A:ADP998
|
3.0
|
34.2
|
1.0
|
O
|
A:HOH1099
|
3.0
|
50.8
|
1.0
|
OG
|
A:SER236
|
3.1
|
32.6
|
1.0
|
CB
|
A:SER181
|
3.2
|
24.6
|
1.0
|
CA
|
A:SER181
|
3.4
|
16.7
|
1.0
|
F4
|
A:ALF999
|
3.6
|
54.9
|
1.0
|
N
|
A:GLY182
|
3.9
|
41.0
|
1.0
|
O
|
A:HOH1039
|
3.9
|
24.5
|
1.0
|
C
|
A:SER181
|
4.1
|
20.9
|
1.0
|
PB
|
A:ADP998
|
4.3
|
43.6
|
1.0
|
O
|
A:GLY457
|
4.3
|
27.8
|
1.0
|
CB
|
A:SER236
|
4.4
|
60.6
|
1.0
|
N
|
A:GLY457
|
4.4
|
39.5
|
1.0
|
O1B
|
A:ADP998
|
4.6
|
22.3
|
1.0
|
N
|
A:SER181
|
4.7
|
25.8
|
1.0
|
OE2
|
A:GLU459
|
4.7
|
8.9
|
1.0
|
CA
|
A:GLY457
|
4.7
|
45.3
|
1.0
|
N
|
A:SER237
|
4.8
|
46.9
|
1.0
|
CA
|
A:SER236
|
4.8
|
7.7
|
1.0
|
O
|
A:HOH1101
|
4.8
|
41.9
|
1.0
|
CB
|
A:ASN233
|
4.9
|
8.1
|
1.0
|
NH2
|
A:ARG238
|
4.9
|
8.5
|
1.0
|
CA
|
A:GLY182
|
5.0
|
26.1
|
1.0
|
C
|
A:GLY457
|
5.0
|
22.0
|
1.0
|
NZ
|
A:LYS185
|
5.0
|
20.6
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 1mnd
Go back to
Fluorine Binding Sites List in 1mnd
Fluorine binding site 4 out
of 4 in the Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Truncated Head of Myosin From Dictyostelium Discoideum Complexed with Mgadp-ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F999
b:54.9
occ:1.00
|
F4
|
A:ALF999
|
0.0
|
54.9
|
1.0
|
AL
|
A:ALF999
|
1.8
|
35.0
|
1.0
|
MG
|
A:MG997
|
2.1
|
42.2
|
1.0
|
O2B
|
A:ADP998
|
2.2
|
48.9
|
1.0
|
O3B
|
A:ADP998
|
2.5
|
34.2
|
1.0
|
F2
|
A:ALF999
|
2.6
|
43.2
|
1.0
|
F1
|
A:ALF999
|
2.6
|
48.6
|
1.0
|
PB
|
A:ADP998
|
2.6
|
43.6
|
1.0
|
OG
|
A:SER237
|
3.1
|
30.0
|
1.0
|
O1B
|
A:ADP998
|
3.2
|
22.3
|
1.0
|
O
|
A:HOH1101
|
3.2
|
41.9
|
1.0
|
NZ
|
A:LYS185
|
3.3
|
20.6
|
1.0
|
F3
|
A:ALF999
|
3.6
|
45.7
|
1.0
|
CB
|
A:SER237
|
3.8
|
33.7
|
1.0
|
O
|
A:ILE455
|
3.9
|
41.9
|
1.0
|
OG1
|
A:THR186
|
3.9
|
15.7
|
1.0
|
O3A
|
A:ADP998
|
4.2
|
23.1
|
1.0
|
OD2
|
A:ASP454
|
4.2
|
71.8
|
1.0
|
N
|
A:GLY457
|
4.3
|
39.5
|
1.0
|
CA
|
A:SER456
|
4.7
|
25.1
|
1.0
|
N
|
A:SER237
|
4.7
|
46.9
|
1.0
|
CE
|
A:LYS185
|
4.7
|
56.8
|
1.0
|
CB
|
A:LYS185
|
4.7
|
69.9
|
1.0
|
CA
|
A:SER237
|
4.8
|
31.0
|
1.0
|
C
|
A:ILE455
|
5.0
|
19.1
|
1.0
|
CB
|
A:THR186
|
5.0
|
32.8
|
1.0
|
|
Reference:
A.J.Fisher,
C.A.Smith,
J.B.Thoden,
R.Smith,
K.Sutoh,
H.M.Holden,
I.Rayment.
X-Ray Structures of the Myosin Motor Domain of Dictyostelium Discoideum Complexed with Mgadp.Befx and Mgadp.ALF4-. Biochemistry V. 34 8960 1995.
ISSN: ISSN 0006-2960
PubMed: 7619795
DOI: 10.1021/BI00028A004
Page generated: Wed Jul 31 12:05:10 2024
|