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Fluorine in PDB 1nel: Fluoride Inhibition of Yeast Enolase: Crystal Structure of the Enolase-MG2+-F--Pi Complex at 2.6-Angstroms Resolution

Enzymatic activity of Fluoride Inhibition of Yeast Enolase: Crystal Structure of the Enolase-MG2+-F--Pi Complex at 2.6-Angstroms Resolution

All present enzymatic activity of Fluoride Inhibition of Yeast Enolase: Crystal Structure of the Enolase-MG2+-F--Pi Complex at 2.6-Angstroms Resolution:
4.2.1.11;

Protein crystallography data

The structure of Fluoride Inhibition of Yeast Enolase: Crystal Structure of the Enolase-MG2+-F--Pi Complex at 2.6-Angstroms Resolution, PDB code: 1nel was solved by L.Lebioda, E.Zhang, K.Lewinski, M.J.Brewer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.60
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 122.500, 122.500, 67.000, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1nel:

The structure of Fluoride Inhibition of Yeast Enolase: Crystal Structure of the Enolase-MG2+-F--Pi Complex at 2.6-Angstroms Resolution also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Fluoride Inhibition of Yeast Enolase: Crystal Structure of the Enolase-MG2+-F--Pi Complex at 2.6-Angstroms Resolution (pdb code 1nel). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Fluoride Inhibition of Yeast Enolase: Crystal Structure of the Enolase-MG2+-F--Pi Complex at 2.6-Angstroms Resolution, PDB code: 1nel:

Fluorine binding site 1 out of 1 in 1nel

Go back to Fluorine Binding Sites List in 1nel
Fluorine binding site 1 out of 1 in the Fluoride Inhibition of Yeast Enolase: Crystal Structure of the Enolase-MG2+-F--Pi Complex at 2.6-Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Fluoride Inhibition of Yeast Enolase: Crystal Structure of the Enolase-MG2+-F--Pi Complex at 2.6-Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F451

b:13.5
occ:0.98
 MG A:MG438 2.1 17.2 1.0
NZ A:LYS396 2.7 9.7 1.0
OD2 A:ASP320 3.0 17.1 1.0
OD2 A:ASP246 3.2 19.7 1.0
CE A:LYS396 3.3 7.1 1.0
OE2 A:GLU168 3.4 19.1 1.0
NZ A:LYS345 3.4 9.5 1.0
OE2 A:GLU295 3.5 14.4 1.0
O A:HOH529 3.6 10.2 1.0
O3 A:PO4444 3.8 31.4 1.0
CD2 A:LEU343 4.0 12.9 1.0
O A:HOH450 4.0 20.3 1.0
CE A:LYS345 4.0 9.9 1.0
CG A:ASP320 4.1 15.8 1.0
OE1 A:GLU295 4.1 12.6 1.0
CD A:GLU295 4.1 13.6 1.0
CD A:LYS396 4.2 4.8 1.0
O2 A:PO4444 4.3 32.1 1.0
CG A:ASP246 4.3 20.1 1.0
CD A:GLU168 4.4 20.8 1.0
P A:PO4444 4.4 32.0 1.0
O1 A:PO4444 4.6 31.6 1.0
OD1 A:ASP320 4.6 14.9 1.0
O A:HOH674 4.7 9.1 1.0
OG A:SER372 4.8 12.4 1.0

Reference:

L.Lebioda, E.Zhang, K.Lewinski, J.M.Brewer. Fluoride Inhibition of Yeast Enolase: Crystal Structure of the Enolase-Mg(2+)-F(-)-Pi Complex at 2.6 A Resolution. Proteins V. 16 219 1993.
ISSN: ISSN 0887-3585
PubMed: 8346189
DOI: 10.1002/PROT.340160302
Page generated: Sun Dec 13 11:31:16 2020

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