Chemical elements
  Fluorine
    Isotopes
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    Production
    Application
    PDB 16pk-1c8m
    PDB 1c9d-1eau
    PDB 1ec0-1grn
    PDB 1gs4-1j97
    PDB 1jdj-1mu8
    PDB 1mue-1oyt
      1mue
      1n0q
      1n2c
      1n6k
      1na1
      1ncq
      1ncr
      1nd3
      1nel
      1ney
      1nf0
      1nhu
      1nhx
      1njs
      1njt
      1nkk
      1nmx
      1nmy
      1nne
      1nzm
      1o28
      1o29
      1o2o
      1o2r
      1o30
      1o35
      1o3m
      1o3n
      1o3o
      1o46
      1o47
      1o5c
      1o5d
      1o5f
      1o5g
      1od1
      1ogw
      1oh9
      1oin
      1ol1
      1ol2
      1oq5
      1ouk
      1ouy
      1ove
      1ovj
      1ow3
      1owz
      1oye
      1oyt
    PDB 1oz1-1rby
    PDB 1rbz-1tu6
    PDB 1tuy-1w9i
    PDB 1w9j-1yw2
    PDB 1yw9-2ax8
    PDB 2ax9-2dqt
    PDB 2dqu-2ftk
    PDB 2fvd-2hhn
    PDB 2hiw-2izs
    PDB 2j51-2onh
    PDB 2oo8-2pow
    PDB 2pq9-2qzl
    PDB 2qzo-2vev
    PDB 2vew-2wf7
    PDB 2wf8-2xhd
    PDB 2xkk-3ar9
    PDB 3az8-3cej
    PDB 3cem-3dh3
    PDB 3dhf-3el7
    PDB 3el8-3fln
    PDB 3flq-3gc7
    PDB 3gc8-3h7w
    PDB 3h82-3i81
    PDB 3i8d-3jx1
    PDB 3jx2-3ktk
    PDB 3ktu-3lj6
    PDB 3lk9-3mqf
    PDB 3ms4-3nz7
    PDB 3o1g-3p4a
    PDB 3p4b-3ti1
    PDB 3tik-4acx
    PDB 4afe-4fk3
    PDB 4fod-7gch

Fluorine in the structure of Endothiapepsin PD135,040 Complex (pdb 1od1)






The binding sites of Fluorine atom in the structure of Endothiapepsin PD135,040 Complex (pdb code 1od1). This binding sites where shown with 5.0 Angstroms radius around Fluorine atom.
The 1od1 structure was solved by L.COATES, P.T.ERSKINE, S.MALL, R.S.GILL, S.P.WOOD, J.B.COOPER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)10.0-1.4
Space groupP1211
a (A)53.201
b (A)73.249
c (A)45.993
alpha (°)90.00
beta (°)110.10
gamma (°)90.00
Rfactor (%)12.5
Rfree (%)15.9


Fluorine Binding Sites:

Fluorine binding site 1 out of 2 in 1od1


Fluorine binding site 1 out of 2 in 1od1
Click to enlarge
stereopicture of Fluorine binding site 1 out of 2 in 1od1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Fluorine in the PDB 1od1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Fluorine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gly80, A: Asp219, A: Thr222, A: 0qs400,

conact list:


AtomAtomDistance (A)
FN A:Gly804.30
FCA A:Gly804.55
FOD2 A:Asp2193.66
FCG A:Asp2194.82
FOG1 A:Thr2223.89
FCA2 A:0qs4002.98
FOH2 A:0qs4003.49
FCD21 A:0qs4003.27
FO1 A:0qs4003.52
FOH1 A:0qs4002.97
FCG1 A:0qs4004.03
FN2' A:0qs4003.31
FC6 A:0qs4002.32
FNE2 A:0qs4003.52
FC5 A:0qs4003.32
FND1 A:0qs4004.66
FCH A:0qs4002.40
FF1 A:0qs4000.00
FCA1 A:0qs4004.28
FCM1 A:0qs4001.31
FF2 A:0qs4002.09
FCB1 A:0qs4004.76
FN1 A:0qs4003.04
FCE11 A:0qs4004.38
FO2 A:0qs4002.69
FCB2 A:0qs4004.45
FC2' A:0qs4004.56

interactive model:


Fluorine binding site 2 out of 2 in 1od1


Fluorine binding site 2 out of 2 in 1od1
Click to enlarge
stereopicture of Fluorine binding site 2 out of 2 in 1od1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Fluorine in the PDB 1od1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Fluorine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp35, A: Gly37, A: Ser38, A: Phe194, A: Ile217, A: Asp219, A: Thr222, A: 0qs400,

conact list:


AtomAtomDistance (A)
FOD2 A:Asp354.89
FOD1 A:Asp354.57
FO A:Gly373.22
FN A:Gly374.66
FC A:Gly373.63
FCA A:Gly373.51
FN A:Ser384.74
FCE1 A:Phe1944.66
FCD1 A:Ile2174.64
FOD2 A:Asp2192.97
FOD1 A:Asp2194.24
FCG A:Asp2193.87
FOG1 A:Thr2224.67
FCA2 A:0qs4003.74
FOH2 A:0qs4002.77
FOH1 A:0qs4002.50
FN2' A:0qs4002.50
FC6 A:0qs4002.35
FCH A:0qs4002.34
FF1 A:0qs4002.09
FCM1 A:0qs4001.34
FF2 A:0qs4000.00
FN1 A:0qs4004.28
FO2 A:0qs4003.44
FC1' A:0qs4004.69
FCB2 A:0qs4004.82
FC2' A:0qs4003.96

interactive model:




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