Atomistry » Fluorine » PDB 1q6n-1rrx » 1qz0
Atomistry »
  Fluorine »
    PDB 1q6n-1rrx »
      1qz0 »

Fluorine in PDB 1qz0: Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide

Enzymatic activity of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide

All present enzymatic activity of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide, PDB code: 1qz0 was solved by J.Phan, K.Lee, S.Cherry, J.E.Tropea, T.R.Burke Jr, D.S.Waugh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 47.292, 53.450, 69.066, 109.61, 104.75, 89.98
R / Rfree (%) 18.8 / 20.9

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide (pdb code 1qz0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide, PDB code: 1qz0:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 1 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F505

b:22.6
occ:1.00
 F1 C:FTY505 0.0 22.6 1.0
C1 C:FTY505 1.4 19.6 1.0
CZ C:FTY505 2.2 20.8 1.0
F2 C:FTY505 2.3 22.0 1.0
CE2 C:FTY505 2.6 19.7 1.0
P C:FTY505 2.7 18.2 1.0
NE2 A:GLN357 3.0 35.3 1.0
O1P C:FTY505 3.1 16.8 1.0
O2P C:FTY505 3.1 17.1 1.0
CB A:ASP356 3.4 26.5 1.0
O C:HOH61 3.4 18.4 1.0
CE1 C:FTY505 3.5 21.4 1.0
N A:GLN357 3.8 26.1 1.0
O3P C:FTY505 3.9 16.9 1.0
CD2 C:FTY505 4.0 20.7 1.0
NH2 A:ARG409 4.0 13.5 1.0
CD A:GLN357 4.1 34.0 1.0
CA A:ASP356 4.1 24.1 1.0
OD2 A:ASP356 4.3 31.7 1.0
CG A:GLN357 4.3 32.0 1.0
CG A:ASP356 4.4 29.7 1.0
C A:ASP356 4.4 25.1 1.0
CD1 C:FTY505 4.6 22.1 1.0
NE A:ARG409 4.6 11.4 1.0
CA A:GLN357 4.6 26.8 1.0
CZ A:ARG409 4.6 11.7 1.0
NE2 A:GLN446 4.7 28.6 1.0
CG C:FTY505 4.8 21.5 1.0

Fluorine binding site 2 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 2 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F505

b:22.0
occ:1.00
 F2 C:FTY505 0.0 22.0 1.0
C1 C:FTY505 1.4 19.6 1.0
CZ C:FTY505 2.2 20.8 1.0
F1 C:FTY505 2.3 22.6 1.0
CE1 C:FTY505 2.6 21.4 1.0
P C:FTY505 2.7 18.2 1.0
O C:HOH61 3.0 18.4 1.0
NE2 A:GLN446 3.0 28.6 1.0
O2P C:FTY505 3.1 17.1 1.0
O3P C:FTY505 3.2 16.9 1.0
NE2 A:GLN357 3.3 35.3 1.0
CE2 C:FTY505 3.5 19.7 1.0
CD A:GLN446 3.9 28.8 1.0
O1P C:FTY505 3.9 16.8 1.0
CA A:GLY408 3.9 11.0 1.0
CD1 C:FTY505 4.0 22.1 1.0
N A:GLY408 4.0 10.4 1.0
CG2 A:VAL407 4.3 13.2 1.0
CB A:GLN446 4.3 22.2 1.0
CD A:GLN357 4.4 34.0 1.0
CG A:GLN446 4.5 25.3 1.0
OE1 A:GLN446 4.6 32.3 1.0
N A:GLN357 4.6 26.1 1.0
CD2 C:FTY505 4.6 20.7 1.0
CG C:FTY505 4.8 21.5 1.0
CA A:GLN357 4.9 26.8 1.0

Fluorine binding site 3 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 3 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F605

b:23.0
occ:1.00
 F1 D:FTY605 0.0 23.0 1.0
C1 D:FTY605 1.4 18.6 1.0
CZ D:FTY605 2.2 17.4 1.0
F2 D:FTY605 2.3 18.8 1.0
P D:FTY605 2.7 16.2 1.0
CE2 D:FTY605 2.7 16.6 1.0
O1P D:FTY605 2.9 17.4 1.0
OE1 D:GLU604 3.0 23.4 1.0
O A:HOH524 3.2 22.3 1.0
O2P D:FTY605 3.3 16.1 1.0
NZ A:LYS342 3.4 24.3 1.0
CE1 D:FTY605 3.4 15.8 1.0
O3P D:FTY605 3.9 13.6 1.0
CD D:GLU604 4.0 23.7 1.0
CD2 D:FTY605 4.0 16.9 1.0
O D:HOH610 4.2 28.8 1.0
O A:HOH690 4.3 29.7 1.0
CD1 D:FTY605 4.5 15.1 1.0
OE2 D:GLU604 4.7 23.4 1.0
CE A:LYS342 4.8 23.4 1.0
CG D:GLU604 4.8 20.7 1.0
CG D:FTY605 4.8 13.4 1.0
NH2 A:ARG278 4.9 13.7 1.0

Fluorine binding site 4 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 4 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F605

b:18.8
occ:1.00
 F2 D:FTY605 0.0 18.8 1.0
C1 D:FTY605 1.4 18.6 1.0
CZ D:FTY605 2.3 17.4 1.0
F1 D:FTY605 2.3 23.0 1.0
CE1 D:FTY605 2.6 15.8 1.0
P D:FTY605 2.7 16.2 1.0
O2P D:FTY605 3.0 16.1 1.0
CA A:SER388 3.2 13.8 1.0
O3P D:FTY605 3.4 13.6 1.0
CE2 D:FTY605 3.6 16.6 1.0
CB A:SER388 3.6 13.0 1.0
N A:SER388 3.8 13.4 1.0
O1P D:FTY605 3.9 17.4 1.0
OG A:SER388 4.0 13.4 1.0
CD1 D:FTY605 4.0 15.1 1.0
O A:GLY387 4.1 14.1 1.0
C A:GLY387 4.2 13.9 1.0
O A:LYS386 4.3 15.0 1.0
N A:SER389 4.3 15.3 1.0
C A:SER388 4.3 15.0 1.0
OE1 D:GLU604 4.5 23.4 1.0
CD2 D:FTY605 4.7 16.9 1.0
O D:HOH610 4.8 28.8 1.0
CG D:FTY605 4.9 13.4 1.0
O D:HOH615 4.9 33.5 1.0
C A:LYS386 4.9 14.8 1.0
CD D:GLU604 5.0 23.7 1.0

Fluorine binding site 5 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 5 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F505

b:23.8
occ:1.00
 F1 E:FTY505 0.0 23.8 1.0
C1 E:FTY505 1.4 20.4 1.0
CZ E:FTY505 2.3 21.6 1.0
F2 E:FTY505 2.3 22.7 1.0
CE2 E:FTY505 2.7 20.6 1.0
P E:FTY505 2.7 18.6 1.0
NE2 B:GLN357 3.0 36.5 1.0
O1P E:FTY505 3.1 17.3 1.0
O2P E:FTY505 3.1 16.1 1.0
CB B:ASP356 3.4 27.1 1.0
O E:HOH138 3.4 19.7 1.0
CE1 E:FTY505 3.5 21.9 1.0
N B:GLN357 3.7 27.9 1.0
O3P E:FTY505 3.9 16.4 1.0
NH2 B:ARG409 4.0 13.9 1.0
CD2 E:FTY505 4.0 21.6 1.0
CD B:GLN357 4.1 34.7 1.0
CA B:ASP356 4.1 25.3 1.0
OD2 B:ASP356 4.2 32.5 1.0
CG B:GLN357 4.2 33.4 1.0
CG B:ASP356 4.3 30.8 1.0
C B:ASP356 4.3 26.6 1.0
CA B:GLN357 4.6 28.0 1.0
NE B:ARG409 4.6 11.5 1.0
CD1 E:FTY505 4.6 23.2 1.0
CZ B:ARG409 4.6 12.8 1.0
NE2 B:GLN446 4.7 28.6 1.0
CG E:FTY505 4.8 21.9 1.0

Fluorine binding site 6 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 6 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F505

b:22.7
occ:1.00
 F2 E:FTY505 0.0 22.7 1.0
C1 E:FTY505 1.4 20.4 1.0
CZ E:FTY505 2.3 21.6 1.0
F1 E:FTY505 2.3 23.8 1.0
CE1 E:FTY505 2.6 21.9 1.0
P E:FTY505 2.7 18.6 1.0
O E:HOH138 2.9 19.7 1.0
NE2 B:GLN446 3.0 28.6 1.0
O2P E:FTY505 3.1 16.1 1.0
O3P E:FTY505 3.2 16.4 1.0
NE2 B:GLN357 3.3 36.5 1.0
CE2 E:FTY505 3.5 20.6 1.0
O1P E:FTY505 3.9 17.3 1.0
CD B:GLN446 3.9 29.1 1.0
CA B:GLY408 3.9 12.1 1.0
CD1 E:FTY505 4.0 23.2 1.0
N B:GLY408 4.1 11.4 1.0
CG2 B:VAL407 4.3 12.0 1.0
CB B:GLN446 4.3 22.5 1.0
CD B:GLN357 4.4 34.7 1.0
N B:GLN357 4.5 27.9 1.0
CG B:GLN446 4.6 26.4 1.0
OE1 B:GLN446 4.6 33.3 1.0
CD2 E:FTY505 4.7 21.6 1.0
CG E:FTY505 4.8 21.9 1.0
CA B:GLN357 4.9 28.0 1.0

Fluorine binding site 7 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 7 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F605

b:22.8
occ:1.00
 F1 F:FTY605 0.0 22.8 1.0
C1 F:FTY605 1.4 18.8 1.0
CZ F:FTY605 2.2 16.6 1.0
F2 F:FTY605 2.3 19.7 1.0
P F:FTY605 2.7 17.7 1.0
CE2 F:FTY605 2.7 16.4 1.0
O1P F:FTY605 2.9 17.4 1.0
OE1 F:GLU604 3.0 24.2 1.0
O B:HOH534 3.1 22.0 1.0
O2P F:FTY605 3.3 17.8 1.0
NZ B:LYS342 3.4 25.5 1.0
CE1 F:FTY605 3.4 14.8 1.0
O3P F:FTY605 3.9 15.8 1.0
CD F:GLU604 4.0 23.6 1.0
CD2 F:FTY605 4.0 16.5 1.0
O F:HOH210 4.0 23.3 1.0
O F:HOH519 4.4 28.2 1.0
CD1 F:FTY605 4.5 14.4 1.0
OE2 F:GLU604 4.7 23.8 1.0
CE B:LYS342 4.7 22.0 1.0
CG F:GLU604 4.8 21.6 1.0
CG F:FTY605 4.8 14.2 1.0
NH2 B:ARG278 4.9 14.5 1.0
CG B:LYS342 4.9 16.8 1.0
CD B:LYS342 5.0 20.3 1.0

Fluorine binding site 8 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 8 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F605

b:19.7
occ:1.00
 F2 F:FTY605 0.0 19.7 1.0
C1 F:FTY605 1.4 18.8 1.0
CZ F:FTY605 2.3 16.6 1.0
F1 F:FTY605 2.3 22.8 1.0
CE1 F:FTY605 2.6 14.8 1.0
P F:FTY605 2.7 17.7 1.0
O2P F:FTY605 3.0 17.8 1.0
CA B:SER388 3.2 13.9 1.0
O3P F:FTY605 3.4 15.8 1.0
CE2 F:FTY605 3.6 16.4 1.0
CB B:SER388 3.6 13.2 1.0
O1P F:FTY605 3.9 17.4 1.0
N B:SER388 3.9 13.4 1.0
OG B:SER388 4.0 13.3 1.0
CD1 F:FTY605 4.0 14.4 1.0
O B:GLY387 4.2 14.5 1.0
C B:GLY387 4.3 13.7 1.0
N B:SER389 4.3 15.8 1.0
C B:SER388 4.3 14.9 1.0
O B:LYS386 4.4 15.4 1.0
OE1 F:GLU604 4.4 24.2 1.0
O F:HOH210 4.5 23.3 1.0
CD2 F:FTY605 4.7 16.5 1.0
CG F:FTY605 4.9 14.2 1.0
CD F:GLU604 5.0 23.6 1.0

Reference:

J.Phan, K.Lee, S.Cherry, J.E.Tropea, T.R.Burke Jr, D.S.Waugh. High-Resolution Structure of the Yersinia Pestis Protein Tyrosine Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide Biochemistry V. 42 13113 2003.
ISSN: ISSN 0006-2960
PubMed: 14609321
DOI: 10.1021/BI030156M
Page generated: Wed Jul 31 12:34:31 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy