Atomistry » Fluorine » PDB 1q6n-1rrx » 1qz0
Atomistry »
  Fluorine »
    PDB 1q6n-1rrx »
      1qz0 »

Fluorine in PDB 1qz0: Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide

Enzymatic activity of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide

All present enzymatic activity of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide, PDB code: 1qz0 was solved by J.Phan, K.Lee, S.Cherry, J.E.Tropea, T.R.Burke Jr, D.S.Waugh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 47.292, 53.450, 69.066, 109.61, 104.75, 89.98
R / Rfree (%) 18.8 / 20.9

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide (pdb code 1qz0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide, PDB code: 1qz0:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 1 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F505

b:22.6
occ:1.00
 F1 C:FTY505 0.0 22.6 1.0
C1 C:FTY505 1.4 19.6 1.0
CZ C:FTY505 2.2 20.8 1.0
F2 C:FTY505 2.3 22.0 1.0
CE2 C:FTY505 2.6 19.7 1.0
P C:FTY505 2.7 18.2 1.0
NE2 A:GLN357 3.0 35.3 1.0
O1P C:FTY505 3.1 16.8 1.0
O2P C:FTY505 3.1 17.1 1.0
CB A:ASP356 3.4 26.5 1.0
O C:HOH61 3.4 18.4 1.0
CE1 C:FTY505 3.5 21.4 1.0
N A:GLN357 3.8 26.1 1.0
O3P C:FTY505 3.9 16.9 1.0
CD2 C:FTY505 4.0 20.7 1.0
NH2 A:ARG409 4.0 13.5 1.0
CD A:GLN357 4.1 34.0 1.0
CA A:ASP356 4.1 24.1 1.0
OD2 A:ASP356 4.3 31.7 1.0
CG A:GLN357 4.3 32.0 1.0
CG A:ASP356 4.4 29.7 1.0
C A:ASP356 4.4 25.1 1.0
CD1 C:FTY505 4.6 22.1 1.0
NE A:ARG409 4.6 11.4 1.0
CA A:GLN357 4.6 26.8 1.0
CZ A:ARG409 4.6 11.7 1.0
NE2 A:GLN446 4.7 28.6 1.0
CG C:FTY505 4.8 21.5 1.0

Fluorine binding site 2 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 2 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F505

b:22.0
occ:1.00
 F2 C:FTY505 0.0 22.0 1.0
C1 C:FTY505 1.4 19.6 1.0
CZ C:FTY505 2.2 20.8 1.0
F1 C:FTY505 2.3 22.6 1.0
CE1 C:FTY505 2.6 21.4 1.0
P C:FTY505 2.7 18.2 1.0
O C:HOH61 3.0 18.4 1.0
NE2 A:GLN446 3.0 28.6 1.0
O2P C:FTY505 3.1 17.1 1.0
O3P C:FTY505 3.2 16.9 1.0
NE2 A:GLN357 3.3 35.3 1.0
CE2 C:FTY505 3.5 19.7 1.0
CD A:GLN446 3.9 28.8 1.0
O1P C:FTY505 3.9 16.8 1.0
CA A:GLY408 3.9 11.0 1.0
CD1 C:FTY505 4.0 22.1 1.0
N A:GLY408 4.0 10.4 1.0
CG2 A:VAL407 4.3 13.2 1.0
CB A:GLN446 4.3 22.2 1.0
CD A:GLN357 4.4 34.0 1.0
CG A:GLN446 4.5 25.3 1.0
OE1 A:GLN446 4.6 32.3 1.0
N A:GLN357 4.6 26.1 1.0
CD2 C:FTY505 4.6 20.7 1.0
CG C:FTY505 4.8 21.5 1.0
CA A:GLN357 4.9 26.8 1.0

Fluorine binding site 3 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 3 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F605

b:23.0
occ:1.00
 F1 D:FTY605 0.0 23.0 1.0
C1 D:FTY605 1.4 18.6 1.0
CZ D:FTY605 2.2 17.4 1.0
F2 D:FTY605 2.3 18.8 1.0
P D:FTY605 2.7 16.2 1.0
CE2 D:FTY605 2.7 16.6 1.0
O1P D:FTY605 2.9 17.4 1.0
OE1 D:GLU604 3.0 23.4 1.0
O A:HOH524 3.2 22.3 1.0
O2P D:FTY605 3.3 16.1 1.0
NZ A:LYS342 3.4 24.3 1.0
CE1 D:FTY605 3.4 15.8 1.0
O3P D:FTY605 3.9 13.6 1.0
CD D:GLU604 4.0 23.7 1.0
CD2 D:FTY605 4.0 16.9 1.0
O D:HOH610 4.2 28.8 1.0
O A:HOH690 4.3 29.7 1.0
CD1 D:FTY605 4.5 15.1 1.0
OE2 D:GLU604 4.7 23.4 1.0
CE A:LYS342 4.8 23.4 1.0
CG D:GLU604 4.8 20.7 1.0
CG D:FTY605 4.8 13.4 1.0
NH2 A:ARG278 4.9 13.7 1.0

Fluorine binding site 4 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 4 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F605

b:18.8
occ:1.00
 F2 D:FTY605 0.0 18.8 1.0
C1 D:FTY605 1.4 18.6 1.0
CZ D:FTY605 2.3 17.4 1.0
F1 D:FTY605 2.3 23.0 1.0
CE1 D:FTY605 2.6 15.8 1.0
P D:FTY605 2.7 16.2 1.0
O2P D:FTY605 3.0 16.1 1.0
CA A:SER388 3.2 13.8 1.0
O3P D:FTY605 3.4 13.6 1.0
CE2 D:FTY605 3.6 16.6 1.0
CB A:SER388 3.6 13.0 1.0
N A:SER388 3.8 13.4 1.0
O1P D:FTY605 3.9 17.4 1.0
OG A:SER388 4.0 13.4 1.0
CD1 D:FTY605 4.0 15.1 1.0
O A:GLY387 4.1 14.1 1.0
C A:GLY387 4.2 13.9 1.0
O A:LYS386 4.3 15.0 1.0
N A:SER389 4.3 15.3 1.0
C A:SER388 4.3 15.0 1.0
OE1 D:GLU604 4.5 23.4 1.0
CD2 D:FTY605 4.7 16.9 1.0
O D:HOH610 4.8 28.8 1.0
CG D:FTY605 4.9 13.4 1.0
O D:HOH615 4.9 33.5 1.0
C A:LYS386 4.9 14.8 1.0
CD D:GLU604 5.0 23.7 1.0

Fluorine binding site 5 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 5 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F505

b:23.8
occ:1.00
 F1 E:FTY505 0.0 23.8 1.0
C1 E:FTY505 1.4 20.4 1.0
CZ E:FTY505 2.3 21.6 1.0
F2 E:FTY505 2.3 22.7 1.0
CE2 E:FTY505 2.7 20.6 1.0
P E:FTY505 2.7 18.6 1.0
NE2 B:GLN357 3.0 36.5 1.0
O1P E:FTY505 3.1 17.3 1.0
O2P E:FTY505 3.1 16.1 1.0
CB B:ASP356 3.4 27.1 1.0
O E:HOH138 3.4 19.7 1.0
CE1 E:FTY505 3.5 21.9 1.0
N B:GLN357 3.7 27.9 1.0
O3P E:FTY505 3.9 16.4 1.0
NH2 B:ARG409 4.0 13.9 1.0
CD2 E:FTY505 4.0 21.6 1.0
CD B:GLN357 4.1 34.7 1.0
CA B:ASP356 4.1 25.3 1.0
OD2 B:ASP356 4.2 32.5 1.0
CG B:GLN357 4.2 33.4 1.0
CG B:ASP356 4.3 30.8 1.0
C B:ASP356 4.3 26.6 1.0
CA B:GLN357 4.6 28.0 1.0
NE B:ARG409 4.6 11.5 1.0
CD1 E:FTY505 4.6 23.2 1.0
CZ B:ARG409 4.6 12.8 1.0
NE2 B:GLN446 4.7 28.6 1.0
CG E:FTY505 4.8 21.9 1.0

Fluorine binding site 6 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 6 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F505

b:22.7
occ:1.00
 F2 E:FTY505 0.0 22.7 1.0
C1 E:FTY505 1.4 20.4 1.0
CZ E:FTY505 2.3 21.6 1.0
F1 E:FTY505 2.3 23.8 1.0
CE1 E:FTY505 2.6 21.9 1.0
P E:FTY505 2.7 18.6 1.0
O E:HOH138 2.9 19.7 1.0
NE2 B:GLN446 3.0 28.6 1.0
O2P E:FTY505 3.1 16.1 1.0
O3P E:FTY505 3.2 16.4 1.0
NE2 B:GLN357 3.3 36.5 1.0
CE2 E:FTY505 3.5 20.6 1.0
O1P E:FTY505 3.9 17.3 1.0
CD B:GLN446 3.9 29.1 1.0
CA B:GLY408 3.9 12.1 1.0
CD1 E:FTY505 4.0 23.2 1.0
N B:GLY408 4.1 11.4 1.0
CG2 B:VAL407 4.3 12.0 1.0
CB B:GLN446 4.3 22.5 1.0
CD B:GLN357 4.4 34.7 1.0
N B:GLN357 4.5 27.9 1.0
CG B:GLN446 4.6 26.4 1.0
OE1 B:GLN446 4.6 33.3 1.0
CD2 E:FTY505 4.7 21.6 1.0
CG E:FTY505 4.8 21.9 1.0
CA B:GLN357 4.9 28.0 1.0

Fluorine binding site 7 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 7 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F605

b:22.8
occ:1.00
 F1 F:FTY605 0.0 22.8 1.0
C1 F:FTY605 1.4 18.8 1.0
CZ F:FTY605 2.2 16.6 1.0
F2 F:FTY605 2.3 19.7 1.0
P F:FTY605 2.7 17.7 1.0
CE2 F:FTY605 2.7 16.4 1.0
O1P F:FTY605 2.9 17.4 1.0
OE1 F:GLU604 3.0 24.2 1.0
O B:HOH534 3.1 22.0 1.0
O2P F:FTY605 3.3 17.8 1.0
NZ B:LYS342 3.4 25.5 1.0
CE1 F:FTY605 3.4 14.8 1.0
O3P F:FTY605 3.9 15.8 1.0
CD F:GLU604 4.0 23.6 1.0
CD2 F:FTY605 4.0 16.5 1.0
O F:HOH210 4.0 23.3 1.0
O F:HOH519 4.4 28.2 1.0
CD1 F:FTY605 4.5 14.4 1.0
OE2 F:GLU604 4.7 23.8 1.0
CE B:LYS342 4.7 22.0 1.0
CG F:GLU604 4.8 21.6 1.0
CG F:FTY605 4.8 14.2 1.0
NH2 B:ARG278 4.9 14.5 1.0
CG B:LYS342 4.9 16.8 1.0
CD B:LYS342 5.0 20.3 1.0

Fluorine binding site 8 out of 8 in 1qz0

Go back to Fluorine Binding Sites List in 1qz0
Fluorine binding site 8 out of 8 in the Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of the Yersinia Pestis Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F605

b:19.7
occ:1.00
 F2 F:FTY605 0.0 19.7 1.0
C1 F:FTY605 1.4 18.8 1.0
CZ F:FTY605 2.3 16.6 1.0
F1 F:FTY605 2.3 22.8 1.0
CE1 F:FTY605 2.6 14.8 1.0
P F:FTY605 2.7 17.7 1.0
O2P F:FTY605 3.0 17.8 1.0
CA B:SER388 3.2 13.9 1.0
O3P F:FTY605 3.4 15.8 1.0
CE2 F:FTY605 3.6 16.4 1.0
CB B:SER388 3.6 13.2 1.0
O1P F:FTY605 3.9 17.4 1.0
N B:SER388 3.9 13.4 1.0
OG B:SER388 4.0 13.3 1.0
CD1 F:FTY605 4.0 14.4 1.0
O B:GLY387 4.2 14.5 1.0
C B:GLY387 4.3 13.7 1.0
N B:SER389 4.3 15.8 1.0
C B:SER388 4.3 14.9 1.0
O B:LYS386 4.4 15.4 1.0
OE1 F:GLU604 4.4 24.2 1.0
O F:HOH210 4.5 23.3 1.0
CD2 F:FTY605 4.7 16.5 1.0
CG F:FTY605 4.9 14.2 1.0
CD F:GLU604 5.0 23.6 1.0

Reference:

J.Phan, K.Lee, S.Cherry, J.E.Tropea, T.R.Burke Jr, D.S.Waugh. High-Resolution Structure of the Yersinia Pestis Protein Tyrosine Phosphatase Yoph in Complex with A Phosphotyrosyl Mimetic-Containing Hexapeptide Biochemistry V. 42 13113 2003.
ISSN: ISSN 0006-2960
PubMed: 14609321
DOI: 10.1021/BI030156M
Page generated: Wed Jul 31 12:34:31 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy