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Fluorine in PDB 1rds: Crystal Structure of Ribonuclease Ms (As Ribonuclease T1 Homologue) Complexed with A Guanylyl-3',5'-Cytidine Analogue

Enzymatic activity of Crystal Structure of Ribonuclease Ms (As Ribonuclease T1 Homologue) Complexed with A Guanylyl-3',5'-Cytidine Analogue

All present enzymatic activity of Crystal Structure of Ribonuclease Ms (As Ribonuclease T1 Homologue) Complexed with A Guanylyl-3',5'-Cytidine Analogue:
3.1.27.3;

Protein crystallography data

The structure of Crystal Structure of Ribonuclease Ms (As Ribonuclease T1 Homologue) Complexed with A Guanylyl-3',5'-Cytidine Analogue, PDB code: 1rds was solved by T.Nonaka, K.T.Nakamura, Y.Mitsui, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.520, 60.570, 34.950, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Ribonuclease Ms (As Ribonuclease T1 Homologue) Complexed with A Guanylyl-3',5'-Cytidine Analogue (pdb code 1rds). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Ribonuclease Ms (As Ribonuclease T1 Homologue) Complexed with A Guanylyl-3',5'-Cytidine Analogue, PDB code: 1rds:

Fluorine binding site 1 out of 1 in 1rds

Go back to Fluorine Binding Sites List in 1rds
Fluorine binding site 1 out of 1 in the Crystal Structure of Ribonuclease Ms (As Ribonuclease T1 Homologue) Complexed with A Guanylyl-3',5'-Cytidine Analogue


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Ribonuclease Ms (As Ribonuclease T1 Homologue) Complexed with A Guanylyl-3',5'-Cytidine Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F106

b:31.5
occ:1.00
 F2D A:GPC106 0.0 31.5 1.0
C2D A:GPC106 1.4 25.8 1.0
C1D A:GPC106 2.4 20.0 1.0
C3D A:GPC106 2.5 25.6 1.0
O3D A:GPC106 2.7 28.7 1.0
ND1 A:HIS39 3.1 27.4 1.0
CG A:HIS39 3.3 27.2 1.0
C4D A:GPC106 3.3 27.8 1.0
O4D A:GPC106 3.4 23.1 1.0
O1C A:GPC106 3.5 21.7 0.6
N9G A:GPC106 3.5 22.4 1.0
CE1 A:HIS39 3.5 30.3 1.0
OE2 A:GLU57 3.6 28.1 1.0
OE1 A:GLU57 3.6 28.2 1.0
PC A:GPC106 3.6 25.4 0.6
CD A:GLU57 3.7 23.9 1.0
PC A:GPC106 3.7 22.5 0.4
O1C A:GPC106 3.7 23.1 0.4
CB A:HIS39 3.8 22.1 1.0
CD2 A:HIS39 3.9 21.4 1.0
O2C A:GPC106 3.9 21.8 0.4
NE2 A:HIS39 4.0 30.3 1.0
O2C A:GPC106 4.1 28.9 0.6
C8G A:GPC106 4.2 20.4 1.0
C4G A:GPC106 4.4 19.6 1.0
CG A:GLU57 4.5 21.1 1.0
O A:GLU40 4.7 14.9 1.0
C5D A:GPC106 4.7 25.4 1.0
CE1 A:TYR37 4.8 12.2 1.0
N3G A:GPC106 4.9 19.1 1.0
O5B A:GPC106 5.0 29.6 0.6

Reference:

T.Nonaka, K.T.Nakamura, S.Uesugi, M.Ikehara, M.Irie, Y.Mitsui. Crystal Structure of Ribonuclease Ms (As A Ribonuclease T1 Homologue) Complexed with A Guanylyl-3',5'-Cytidine Analogue. Biochemistry V. 32 11825 1993.
ISSN: ISSN 0006-2960
PubMed: 8218254
DOI: 10.1021/BI00095A011
Page generated: Wed Jul 31 12:36:45 2024

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