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Fluorine in PDB 1ta0: Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand.

Enzymatic activity of Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand.

All present enzymatic activity of Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand.:
3.1.3.16;

Protein crystallography data

The structure of Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand., PDB code: 1ta0 was solved by T.Kamenski, S.Heilmeier, T.Meinhart, P.Cramer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.10
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 117.820, 47.170, 40.070, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 22.7

Other elements in 1ta0:

The structure of Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand. (pdb code 1ta0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand., PDB code: 1ta0:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 1ta0

Go back to Fluorine Binding Sites List in 1ta0
Fluorine binding site 1 out of 3 in the Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F96

b:20.0
occ:1.00
F1 A:BFD96 0.0 20.0 1.0
BE A:BFD96 1.5 20.0 1.0
F2 A:BFD96 2.4 20.0 1.0
F3 A:BFD96 2.5 20.0 1.0
OD1 A:BFD96 2.6 10.2 1.0
O A:HOH381 2.8 11.6 1.0
N A:ALA153 2.8 8.7 1.0
NZ A:LYS190 3.1 6.9 1.0
OG1 A:THR152 3.5 12.1 1.0
CB A:ALA153 3.5 8.6 1.0
CA A:THR152 3.5 8.3 1.0
C A:THR152 3.6 8.6 1.0
CA A:ALA153 3.7 9.0 1.0
CG A:BFD96 3.8 11.9 1.0
CE A:LYS190 3.8 8.3 1.0
O A:HOH290 3.9 13.2 1.0
CB A:THR152 4.0 8.5 1.0
OD2 A:BFD96 4.3 13.6 1.0
MG A:MG273 4.4 17.7 1.0
O A:PHE151 4.5 7.7 1.0
O A:HOH330 4.5 23.5 1.0
N A:SER154 4.6 11.3 1.0
C A:ALA153 4.6 9.8 1.0
N A:THR152 4.8 7.3 1.0
OD2 A:ASP206 4.8 11.1 1.0
O A:THR152 4.8 7.0 1.0
N A:LEU97 4.9 5.3 1.0
CB A:BFD96 4.9 8.9 1.0

Fluorine binding site 2 out of 3 in 1ta0

Go back to Fluorine Binding Sites List in 1ta0
Fluorine binding site 2 out of 3 in the Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F96

b:20.0
occ:1.00
F2 A:BFD96 0.0 20.0 1.0
BE A:BFD96 1.5 20.0 1.0
MG A:MG273 2.1 17.7 1.0
F1 A:BFD96 2.4 20.0 1.0
F3 A:BFD96 2.5 20.0 1.0
OD1 A:BFD96 2.6 10.2 1.0
OD2 A:BFD96 2.8 13.6 1.0
O A:HOH290 3.0 13.2 1.0
CG A:BFD96 3.0 11.9 1.0
O A:ASP98 3.2 7.9 1.0
O A:HOH381 3.4 11.6 1.0
CB A:ASP98 3.5 9.8 1.0
N A:ASP98 3.6 8.1 1.0
CA A:ASP98 3.8 9.3 1.0
O A:HOH380 3.9 16.9 1.0
C A:ASP98 3.9 9.5 1.0
OD1 A:ASN207 4.3 7.0 1.0
N A:LEU97 4.4 5.3 1.0
OD2 A:ASP98 4.4 13.7 1.0
CG A:ASP98 4.5 13.1 1.0
C A:LEU97 4.5 6.4 1.0
CB A:BFD96 4.5 8.9 1.0
NZ A:LYS190 4.6 6.9 1.0
OG1 A:THR152 4.7 12.1 1.0
OD1 A:ASP206 4.9 8.6 1.0
CA A:LEU97 5.0 7.2 1.0

Fluorine binding site 3 out of 3 in 1ta0

Go back to Fluorine Binding Sites List in 1ta0
Fluorine binding site 3 out of 3 in the Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Three-Dimensional Structure of A Rna-Polymerase II Binding Protein with Associated Ligand. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F96

b:20.0
occ:1.00
F3 A:BFD96 0.0 20.0 1.0
BE A:BFD96 1.5 20.0 1.0
F2 A:BFD96 2.5 20.0 1.0
F1 A:BFD96 2.5 20.0 1.0
OG1 A:THR152 2.6 12.1 1.0
OD1 A:BFD96 2.7 10.2 1.0
N A:ASP98 2.9 8.1 1.0
N A:LEU97 3.1 5.3 1.0
CB A:THR152 3.3 8.5 1.0
CB A:LEU97 3.4 6.9 1.0
CA A:LEU97 3.5 7.2 1.0
CG A:BFD96 3.5 11.9 1.0
C A:LEU97 3.7 6.4 1.0
OD2 A:ASP98 3.7 13.7 1.0
CA A:THR152 3.7 8.3 1.0
CB A:ASP98 3.8 9.8 1.0
OD2 A:BFD96 3.9 13.6 1.0
CA A:ASP98 3.9 9.3 1.0
N A:ALA153 4.1 8.7 1.0
CG A:ASP98 4.1 13.1 1.0
C A:BFD96 4.2 5.7 1.0
MG A:MG273 4.3 17.7 1.0
C A:THR152 4.4 8.6 1.0
CA A:BFD96 4.5 7.5 1.0
CG A:LEU97 4.6 6.6 1.0
O A:ASP98 4.6 7.9 1.0
CB A:BFD96 4.6 8.9 1.0
NZ A:LYS190 4.7 6.9 1.0
CG2 A:THR152 4.7 11.6 1.0
C A:ASP98 4.8 9.5 1.0
OG A:SER154 4.8 19.1 1.0
O A:PHE151 4.8 7.7 1.0
O A:LEU97 4.8 6.0 1.0
N A:THR152 4.9 7.3 1.0
N A:SER154 5.0 11.3 1.0
O A:HOH381 5.0 11.6 1.0

Reference:

T.Kamenski, S.Heilmeier, T.Meinhart, P.Cramer. Structure and Mechanism of Rna Polymerase II Ctd Phosphatases. Mol.Cell V. 15 399 2004.
ISSN: ISSN 1097-2765
PubMed: 15304220
DOI: 10.1016/J.MOLCEL.2004.06.035
Page generated: Wed Jul 31 12:56:35 2024

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