Fluorine in PDB 1tad: Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Protein crystallography data
The structure of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-, PDB code: 1tad
was solved by
J.Sondek,
D.G.Lambright,
J.P.Noel,
H.E.Hamm,
P.B.Sigler,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
1.70
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.900,
108.200,
79.000,
90.00,
111.70,
90.00
|
R / Rfree (%)
|
20.9 /
26.6
|
Other elements in 1tad:
The structure of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
(pdb code 1tad). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-, PDB code: 1tad:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 1tad
Go back to
Fluorine Binding Sites List in 1tad
Fluorine binding site 1 out
of 12 in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F355
b:10.2
occ:1.00
|
F1
|
A:ALF355
|
0.0
|
10.2
|
1.0
|
AL
|
A:ALF355
|
1.8
|
10.3
|
1.0
|
F3
|
A:ALF355
|
2.5
|
10.0
|
1.0
|
F4
|
A:ALF355
|
2.5
|
11.5
|
1.0
|
O3B
|
A:GDP351
|
2.6
|
9.0
|
1.0
|
O
|
A:HOH400
|
2.7
|
9.8
|
1.0
|
NH2
|
A:ARG174
|
2.7
|
12.6
|
1.0
|
OE1
|
A:GLN200
|
2.7
|
16.7
|
1.0
|
NH1
|
A:ARG174
|
3.3
|
6.9
|
1.0
|
N
|
A:GLU39
|
3.3
|
11.1
|
1.0
|
CZ
|
A:ARG174
|
3.4
|
9.3
|
1.0
|
NE2
|
A:GLN200
|
3.4
|
11.2
|
1.0
|
CD
|
A:GLN200
|
3.5
|
15.2
|
1.0
|
F2
|
A:ALF355
|
3.6
|
11.4
|
1.0
|
CA
|
A:GLY38
|
3.9
|
12.5
|
1.0
|
CG
|
A:LYS176
|
4.1
|
17.0
|
1.0
|
C
|
A:GLY38
|
4.1
|
11.8
|
1.0
|
CA
|
A:GLU39
|
4.1
|
12.5
|
1.0
|
CG
|
A:GLU39
|
4.2
|
15.1
|
1.0
|
PB
|
A:GDP351
|
4.2
|
9.7
|
1.0
|
CA
|
A:LYS176
|
4.5
|
12.6
|
1.0
|
CB
|
A:LYS176
|
4.6
|
14.1
|
1.0
|
NE
|
A:ARG174
|
4.7
|
10.0
|
1.0
|
O3A
|
A:GDP351
|
4.7
|
11.5
|
1.0
|
CB
|
A:GLU39
|
4.7
|
11.9
|
1.0
|
CA
|
A:CA352
|
4.8
|
13.4
|
1.0
|
N
|
A:THR177
|
4.8
|
11.2
|
1.0
|
O
|
A:HOH418
|
4.8
|
18.8
|
1.0
|
O
|
A:HOH702
|
4.8
|
19.0
|
1.0
|
O1B
|
A:GDP351
|
4.8
|
9.8
|
1.0
|
N
|
A:GLY199
|
4.9
|
12.6
|
1.0
|
O2B
|
A:GDP351
|
4.9
|
8.5
|
1.0
|
CG
|
A:GLN200
|
5.0
|
14.9
|
1.0
|
O
|
A:THR177
|
5.0
|
14.3
|
1.0
|
CD
|
A:LYS176
|
5.0
|
19.3
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 1tad
Go back to
Fluorine Binding Sites List in 1tad
Fluorine binding site 2 out
of 12 in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F355
b:11.4
occ:1.00
|
F2
|
A:ALF355
|
0.0
|
11.4
|
1.0
|
AL
|
A:ALF355
|
1.8
|
10.3
|
1.0
|
CA
|
A:CA352
|
2.3
|
13.4
|
1.0
|
F3
|
A:ALF355
|
2.5
|
10.0
|
1.0
|
F4
|
A:ALF355
|
2.5
|
11.5
|
1.0
|
O3B
|
A:GDP351
|
2.6
|
9.0
|
1.0
|
O
|
A:HOH400
|
2.7
|
9.8
|
1.0
|
O
|
A:HOH402
|
2.8
|
9.5
|
1.0
|
O2B
|
A:GDP351
|
3.1
|
8.5
|
1.0
|
CE
|
A:LYS42
|
3.2
|
8.8
|
1.0
|
PB
|
A:GDP351
|
3.2
|
9.7
|
1.0
|
NZ
|
A:LYS42
|
3.4
|
9.2
|
1.0
|
O
|
A:VAL197
|
3.5
|
14.1
|
1.0
|
OG1
|
A:THR177
|
3.5
|
10.2
|
1.0
|
F1
|
A:ALF355
|
3.6
|
10.2
|
1.0
|
CA
|
A:GLY198
|
3.6
|
13.2
|
1.0
|
O1B
|
A:GDP351
|
3.7
|
9.8
|
1.0
|
N
|
A:GLY199
|
3.8
|
12.6
|
1.0
|
C
|
A:GLY198
|
4.1
|
12.9
|
1.0
|
O
|
A:THR177
|
4.2
|
14.3
|
1.0
|
C
|
A:VAL197
|
4.3
|
14.8
|
1.0
|
N
|
A:GLY198
|
4.3
|
13.2
|
1.0
|
O
|
A:HOH401
|
4.4
|
8.0
|
1.0
|
CD
|
A:LYS42
|
4.6
|
11.1
|
1.0
|
O3A
|
A:GDP351
|
4.7
|
11.5
|
1.0
|
N
|
A:THR177
|
4.7
|
11.2
|
1.0
|
OG
|
A:SER43
|
4.7
|
12.6
|
1.0
|
CB
|
A:LYS42
|
4.8
|
8.6
|
1.0
|
CA
|
A:GLY199
|
4.8
|
9.2
|
1.0
|
CB
|
A:THR177
|
4.8
|
12.0
|
1.0
|
C
|
A:THR177
|
5.0
|
13.0
|
1.0
|
O
|
A:HOH444
|
5.0
|
20.4
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 1tad
Go back to
Fluorine Binding Sites List in 1tad
Fluorine binding site 3 out
of 12 in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F355
b:10.0
occ:1.00
|
F3
|
A:ALF355
|
0.0
|
10.0
|
1.0
|
AL
|
A:ALF355
|
1.8
|
10.3
|
1.0
|
F2
|
A:ALF355
|
2.5
|
11.4
|
1.0
|
F1
|
A:ALF355
|
2.5
|
10.2
|
1.0
|
O
|
A:HOH400
|
2.7
|
9.8
|
1.0
|
O3B
|
A:GDP351
|
2.7
|
9.0
|
1.0
|
NZ
|
A:LYS42
|
2.8
|
9.2
|
1.0
|
N
|
A:GLY199
|
2.9
|
12.6
|
1.0
|
CA
|
A:GLY38
|
3.1
|
12.5
|
1.0
|
N
|
A:GLU39
|
3.3
|
11.1
|
1.0
|
CA
|
A:GLY199
|
3.4
|
9.2
|
1.0
|
F4
|
A:ALF355
|
3.6
|
11.5
|
1.0
|
CE
|
A:LYS42
|
3.6
|
8.8
|
1.0
|
C
|
A:GLY38
|
3.7
|
11.8
|
1.0
|
NE2
|
A:GLN200
|
3.7
|
11.2
|
1.0
|
OE1
|
A:GLN200
|
3.7
|
16.7
|
1.0
|
O
|
A:ALA37
|
3.7
|
10.3
|
1.0
|
O1B
|
A:GDP351
|
3.7
|
9.8
|
1.0
|
PB
|
A:GDP351
|
3.8
|
9.7
|
1.0
|
N
|
A:GLY38
|
3.8
|
13.2
|
1.0
|
C
|
A:GLY198
|
3.9
|
12.9
|
1.0
|
CD
|
A:GLN200
|
4.0
|
15.2
|
1.0
|
C
|
A:ALA37
|
4.0
|
12.3
|
1.0
|
C
|
A:GLY199
|
4.1
|
9.9
|
1.0
|
N
|
A:GLN200
|
4.2
|
12.2
|
1.0
|
CA
|
A:GLY198
|
4.2
|
13.2
|
1.0
|
CA
|
A:GLU39
|
4.5
|
12.5
|
1.0
|
O2B
|
A:GDP351
|
4.5
|
8.5
|
1.0
|
CA
|
A:CA352
|
4.6
|
13.4
|
1.0
|
O
|
A:GLY38
|
4.9
|
10.9
|
1.0
|
O
|
A:GLY36
|
4.9
|
11.0
|
1.0
|
O
|
A:VAL197
|
4.9
|
14.1
|
1.0
|
O3A
|
A:GDP351
|
5.0
|
11.5
|
1.0
|
O
|
A:GLY199
|
5.0
|
10.7
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 1tad
Go back to
Fluorine Binding Sites List in 1tad
Fluorine binding site 4 out
of 12 in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F355
b:11.5
occ:1.00
|
F4
|
A:ALF355
|
0.0
|
11.5
|
1.0
|
AL
|
A:ALF355
|
1.8
|
10.3
|
1.0
|
CA
|
A:CA352
|
2.5
|
13.4
|
1.0
|
F2
|
A:ALF355
|
2.5
|
11.4
|
1.0
|
F1
|
A:ALF355
|
2.5
|
10.2
|
1.0
|
O3B
|
A:GDP351
|
2.6
|
9.0
|
1.0
|
O
|
A:HOH400
|
2.7
|
9.8
|
1.0
|
N
|
A:THR177
|
3.0
|
11.2
|
1.0
|
O
|
A:HOH401
|
3.0
|
8.0
|
1.0
|
NH1
|
A:ARG174
|
3.1
|
6.9
|
1.0
|
OG1
|
A:THR177
|
3.4
|
10.2
|
1.0
|
CA
|
A:LYS176
|
3.6
|
12.6
|
1.0
|
F3
|
A:ALF355
|
3.6
|
10.0
|
1.0
|
O2B
|
A:GDP351
|
3.6
|
8.5
|
1.0
|
NH2
|
A:ARG174
|
3.7
|
12.6
|
1.0
|
PB
|
A:GDP351
|
3.7
|
9.7
|
1.0
|
C
|
A:LYS176
|
3.7
|
12.2
|
1.0
|
CZ
|
A:ARG174
|
3.8
|
9.3
|
1.0
|
O
|
A:VAL175
|
3.8
|
13.7
|
1.0
|
O
|
A:THR177
|
3.8
|
14.3
|
1.0
|
CA
|
A:THR177
|
4.0
|
11.5
|
1.0
|
CB
|
A:THR177
|
4.2
|
12.0
|
1.0
|
CG
|
A:LYS176
|
4.3
|
17.0
|
1.0
|
C
|
A:THR177
|
4.4
|
13.0
|
1.0
|
CB
|
A:LYS176
|
4.4
|
14.1
|
1.0
|
O3A
|
A:GDP351
|
4.4
|
11.5
|
1.0
|
O2A
|
A:GDP351
|
4.5
|
8.0
|
1.0
|
N
|
A:LYS176
|
4.6
|
12.2
|
1.0
|
CG2
|
A:THR177
|
4.6
|
14.0
|
1.0
|
O
|
A:HOH402
|
4.6
|
9.5
|
1.0
|
C
|
A:VAL175
|
4.6
|
10.2
|
1.0
|
OG
|
A:SER43
|
4.8
|
12.6
|
1.0
|
NE2
|
A:GLN200
|
4.8
|
11.2
|
1.0
|
O1B
|
A:GDP351
|
4.8
|
9.8
|
1.0
|
NE
|
A:ARG174
|
4.9
|
10.0
|
1.0
|
O
|
A:LYS176
|
4.9
|
14.8
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 1tad
Go back to
Fluorine Binding Sites List in 1tad
Fluorine binding site 5 out
of 12 in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F355
b:14.0
occ:1.00
|
F1
|
B:ALF355
|
0.0
|
14.0
|
1.0
|
AL
|
B:ALF355
|
1.8
|
11.6
|
1.0
|
F4
|
B:ALF355
|
2.5
|
11.6
|
1.0
|
F3
|
B:ALF355
|
2.5
|
13.9
|
1.0
|
O
|
B:HOH403
|
2.7
|
12.4
|
1.0
|
O3B
|
B:GDP351
|
2.7
|
10.8
|
1.0
|
N
|
B:GLY199
|
2.8
|
14.9
|
1.0
|
NZ
|
B:LYS42
|
2.8
|
11.8
|
1.0
|
CA
|
B:GLY38
|
3.0
|
15.1
|
1.0
|
N
|
B:GLU39
|
3.2
|
16.1
|
1.0
|
CA
|
B:GLY199
|
3.3
|
15.9
|
1.0
|
F2
|
B:ALF355
|
3.6
|
14.1
|
1.0
|
C
|
B:GLY38
|
3.6
|
17.2
|
1.0
|
CE
|
B:LYS42
|
3.6
|
12.5
|
1.0
|
OE1
|
B:GLN200
|
3.7
|
20.4
|
1.0
|
O
|
B:ALA37
|
3.7
|
14.9
|
1.0
|
O1B
|
B:GDP351
|
3.8
|
12.9
|
1.0
|
PB
|
B:GDP351
|
3.8
|
10.9
|
1.0
|
N
|
B:GLY38
|
3.8
|
15.1
|
1.0
|
NE2
|
B:GLN200
|
3.8
|
18.8
|
1.0
|
C
|
B:GLY198
|
3.9
|
15.6
|
1.0
|
C
|
B:ALA37
|
4.0
|
14.0
|
1.0
|
CD
|
B:GLN200
|
4.1
|
20.4
|
1.0
|
C
|
B:GLY199
|
4.1
|
15.6
|
1.0
|
N
|
B:GLN200
|
4.2
|
16.5
|
1.0
|
CA
|
B:GLY198
|
4.2
|
15.7
|
1.0
|
CA
|
B:GLU39
|
4.4
|
16.1
|
1.0
|
O2B
|
B:GDP351
|
4.6
|
9.4
|
1.0
|
CA
|
B:CA352
|
4.7
|
16.9
|
1.0
|
O
|
B:GLY36
|
4.8
|
15.1
|
1.0
|
O
|
B:GLY38
|
4.8
|
18.0
|
1.0
|
O
|
B:VAL197
|
4.9
|
15.6
|
1.0
|
O3A
|
B:GDP351
|
4.9
|
14.9
|
1.0
|
O
|
B:GLY199
|
5.0
|
18.3
|
1.0
|
N
|
B:SER40
|
5.0
|
16.1
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 1tad
Go back to
Fluorine Binding Sites List in 1tad
Fluorine binding site 6 out
of 12 in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F355
b:14.1
occ:1.00
|
F2
|
B:ALF355
|
0.0
|
14.1
|
1.0
|
AL
|
B:ALF355
|
1.8
|
11.6
|
1.0
|
CA
|
B:CA352
|
2.5
|
16.9
|
1.0
|
F4
|
B:ALF355
|
2.5
|
11.6
|
1.0
|
F3
|
B:ALF355
|
2.6
|
13.9
|
1.0
|
O3B
|
B:GDP351
|
2.6
|
10.8
|
1.0
|
O
|
B:HOH403
|
2.6
|
12.4
|
1.0
|
O
|
B:HOH405
|
2.9
|
11.1
|
1.0
|
N
|
B:THR177
|
3.0
|
16.0
|
1.0
|
NH1
|
B:ARG174
|
3.3
|
10.3
|
1.0
|
OG1
|
B:THR177
|
3.5
|
13.6
|
1.0
|
O2B
|
B:GDP351
|
3.5
|
9.4
|
1.0
|
F1
|
B:ALF355
|
3.6
|
14.0
|
1.0
|
CA
|
B:LYS176
|
3.6
|
17.7
|
1.0
|
PB
|
B:GDP351
|
3.6
|
10.9
|
1.0
|
O
|
B:THR177
|
3.7
|
16.8
|
1.0
|
C
|
B:LYS176
|
3.8
|
17.4
|
1.0
|
NH2
|
B:ARG174
|
3.8
|
12.7
|
1.0
|
O
|
B:VAL175
|
3.8
|
17.9
|
1.0
|
CZ
|
B:ARG174
|
3.9
|
12.1
|
1.0
|
CA
|
B:THR177
|
4.0
|
16.2
|
1.0
|
CB
|
B:THR177
|
4.2
|
14.4
|
1.0
|
C
|
B:THR177
|
4.3
|
17.2
|
1.0
|
CG
|
B:LYS176
|
4.3
|
23.5
|
1.0
|
O3A
|
B:GDP351
|
4.4
|
14.9
|
1.0
|
O2A
|
B:GDP351
|
4.5
|
13.5
|
1.0
|
CB
|
B:LYS176
|
4.5
|
19.0
|
1.0
|
CG2
|
B:THR177
|
4.5
|
13.4
|
1.0
|
O
|
B:HOH404
|
4.6
|
11.7
|
1.0
|
N
|
B:LYS176
|
4.6
|
16.0
|
1.0
|
OG
|
B:SER43
|
4.6
|
13.4
|
1.0
|
C
|
B:VAL175
|
4.7
|
16.1
|
1.0
|
O1B
|
B:GDP351
|
4.8
|
12.9
|
1.0
|
OE1
|
B:GLN200
|
4.9
|
20.4
|
1.0
|
O
|
B:LYS176
|
5.0
|
17.2
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 1tad
Go back to
Fluorine Binding Sites List in 1tad
Fluorine binding site 7 out
of 12 in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F355
b:13.9
occ:1.00
|
F3
|
B:ALF355
|
0.0
|
13.9
|
1.0
|
AL
|
B:ALF355
|
1.8
|
11.6
|
1.0
|
F1
|
B:ALF355
|
2.5
|
14.0
|
1.0
|
O3B
|
B:GDP351
|
2.6
|
10.8
|
1.0
|
F2
|
B:ALF355
|
2.6
|
14.1
|
1.0
|
O
|
B:HOH403
|
2.6
|
12.4
|
1.0
|
NH2
|
B:ARG174
|
2.7
|
12.7
|
1.0
|
NE2
|
B:GLN200
|
2.8
|
18.8
|
1.0
|
N
|
B:GLU39
|
3.2
|
16.1
|
1.0
|
NH1
|
B:ARG174
|
3.3
|
10.3
|
1.0
|
CZ
|
B:ARG174
|
3.5
|
12.1
|
1.0
|
OE1
|
B:GLN200
|
3.5
|
20.4
|
1.0
|
CD
|
B:GLN200
|
3.6
|
20.4
|
1.0
|
F4
|
B:ALF355
|
3.6
|
11.6
|
1.0
|
CA
|
B:GLY38
|
3.9
|
15.1
|
1.0
|
CA
|
B:GLU39
|
4.0
|
16.1
|
1.0
|
C
|
B:GLY38
|
4.0
|
17.2
|
1.0
|
CG
|
B:GLU39
|
4.1
|
15.8
|
1.0
|
CG
|
B:LYS176
|
4.1
|
23.5
|
1.0
|
PB
|
B:GDP351
|
4.1
|
10.9
|
1.0
|
CA
|
B:LYS176
|
4.6
|
17.7
|
1.0
|
CD
|
B:LYS176
|
4.6
|
31.4
|
1.0
|
CB
|
B:GLU39
|
4.6
|
14.9
|
1.0
|
CB
|
B:LYS176
|
4.7
|
19.0
|
1.0
|
O3A
|
B:GDP351
|
4.7
|
14.9
|
1.0
|
O
|
B:HOH587
|
4.7
|
28.7
|
1.0
|
CA
|
B:CA352
|
4.7
|
16.9
|
1.0
|
NE
|
B:ARG174
|
4.8
|
13.4
|
1.0
|
O
|
B:HOH831
|
4.8
|
23.7
|
1.0
|
N
|
B:GLY199
|
4.8
|
14.9
|
1.0
|
O1B
|
B:GDP351
|
4.8
|
12.9
|
1.0
|
O2B
|
B:GDP351
|
4.9
|
9.4
|
1.0
|
N
|
B:THR177
|
4.9
|
16.0
|
1.0
|
O
|
B:THR177
|
4.9
|
16.8
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 1tad
Go back to
Fluorine Binding Sites List in 1tad
Fluorine binding site 8 out
of 12 in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F355
b:11.6
occ:1.00
|
F4
|
B:ALF355
|
0.0
|
11.6
|
1.0
|
AL
|
B:ALF355
|
1.8
|
11.6
|
1.0
|
CA
|
B:CA352
|
2.4
|
16.9
|
1.0
|
F1
|
B:ALF355
|
2.5
|
14.0
|
1.0
|
F2
|
B:ALF355
|
2.5
|
14.1
|
1.0
|
O3B
|
B:GDP351
|
2.7
|
10.8
|
1.0
|
O
|
B:HOH403
|
2.7
|
12.4
|
1.0
|
O
|
B:HOH404
|
3.0
|
11.7
|
1.0
|
O2B
|
B:GDP351
|
3.1
|
9.4
|
1.0
|
CE
|
B:LYS42
|
3.1
|
12.5
|
1.0
|
PB
|
B:GDP351
|
3.2
|
10.9
|
1.0
|
O
|
B:VAL197
|
3.3
|
15.6
|
1.0
|
NZ
|
B:LYS42
|
3.4
|
11.8
|
1.0
|
CA
|
B:GLY198
|
3.5
|
15.7
|
1.0
|
F3
|
B:ALF355
|
3.6
|
13.9
|
1.0
|
N
|
B:GLY199
|
3.6
|
14.9
|
1.0
|
O1B
|
B:GDP351
|
3.7
|
12.9
|
1.0
|
OG1
|
B:THR177
|
3.7
|
13.6
|
1.0
|
C
|
B:GLY198
|
4.0
|
15.6
|
1.0
|
C
|
B:VAL197
|
4.1
|
14.4
|
1.0
|
O
|
B:THR177
|
4.1
|
16.8
|
1.0
|
N
|
B:GLY198
|
4.2
|
15.8
|
1.0
|
O
|
B:HOH405
|
4.4
|
11.1
|
1.0
|
CD
|
B:LYS42
|
4.5
|
11.8
|
1.0
|
CB
|
B:LYS42
|
4.6
|
11.5
|
1.0
|
OG
|
B:SER43
|
4.6
|
13.4
|
1.0
|
O3A
|
B:GDP351
|
4.7
|
14.9
|
1.0
|
CA
|
B:GLY199
|
4.7
|
15.9
|
1.0
|
N
|
B:THR177
|
4.8
|
16.0
|
1.0
|
C
|
B:THR177
|
4.9
|
17.2
|
1.0
|
CB
|
B:THR177
|
4.9
|
14.4
|
1.0
|
O
|
B:HOH839
|
5.0
|
19.4
|
1.0
|
CG
|
B:LYS42
|
5.0
|
10.4
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 1tad
Go back to
Fluorine Binding Sites List in 1tad
Fluorine binding site 9 out
of 12 in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F355
b:12.3
occ:1.00
|
F1
|
C:ALF355
|
0.0
|
12.3
|
1.0
|
AL
|
C:ALF355
|
1.8
|
12.3
|
1.0
|
CA
|
C:CA352
|
2.4
|
12.3
|
1.0
|
F4
|
C:ALF355
|
2.5
|
11.9
|
1.0
|
F3
|
C:ALF355
|
2.5
|
13.8
|
1.0
|
O
|
C:HOH406
|
2.7
|
10.9
|
1.0
|
O3B
|
C:GDP351
|
2.8
|
11.9
|
1.0
|
O
|
C:HOH407
|
2.9
|
11.6
|
1.0
|
O2B
|
C:GDP351
|
3.1
|
7.7
|
1.0
|
CE
|
C:LYS42
|
3.2
|
8.4
|
1.0
|
PB
|
C:GDP351
|
3.3
|
9.6
|
1.0
|
NZ
|
C:LYS42
|
3.4
|
7.5
|
1.0
|
O
|
C:VAL197
|
3.5
|
11.6
|
1.0
|
CA
|
C:GLY198
|
3.5
|
10.9
|
1.0
|
F2
|
C:ALF355
|
3.6
|
12.5
|
1.0
|
N
|
C:GLY199
|
3.6
|
11.4
|
1.0
|
OG1
|
C:THR177
|
3.6
|
15.5
|
1.0
|
O1B
|
C:GDP351
|
3.7
|
10.3
|
1.0
|
C
|
C:GLY198
|
4.0
|
12.0
|
1.0
|
O
|
C:THR177
|
4.1
|
15.7
|
1.0
|
C
|
C:VAL197
|
4.2
|
11.9
|
1.0
|
N
|
C:GLY198
|
4.2
|
12.8
|
1.0
|
O
|
C:HOH408
|
4.4
|
7.3
|
1.0
|
CD
|
C:LYS42
|
4.6
|
9.8
|
1.0
|
CA
|
C:GLY199
|
4.7
|
11.3
|
1.0
|
OG
|
C:SER43
|
4.7
|
11.1
|
1.0
|
N
|
C:THR177
|
4.8
|
14.9
|
1.0
|
O3A
|
C:GDP351
|
4.8
|
12.1
|
1.0
|
CB
|
C:LYS42
|
4.8
|
9.7
|
1.0
|
C
|
C:THR177
|
4.9
|
16.3
|
1.0
|
CB
|
C:THR177
|
4.9
|
16.2
|
1.0
|
O
|
C:HOH918
|
5.0
|
23.8
|
1.0
|
NE2
|
C:GLN200
|
5.0
|
11.9
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 1tad
Go back to
Fluorine Binding Sites List in 1tad
Fluorine binding site 10 out
of 12 in the Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4-
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Gtpase Mechanism of Gproteins From the 1.7-Angstrom Crystal Structure of Transducin Alpha-Gdp-ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F355
b:12.5
occ:1.00
|
F2
|
C:ALF355
|
0.0
|
12.5
|
1.0
|
AL
|
C:ALF355
|
1.8
|
12.3
|
1.0
|
F4
|
C:ALF355
|
2.5
|
11.9
|
1.0
|
F3
|
C:ALF355
|
2.6
|
13.8
|
1.0
|
O3B
|
C:GDP351
|
2.6
|
11.9
|
1.0
|
NH2
|
C:ARG174
|
2.7
|
11.1
|
1.0
|
O
|
C:HOH406
|
2.7
|
10.9
|
1.0
|
OE1
|
C:GLN200
|
2.8
|
16.2
|
1.0
|
NH1
|
C:ARG174
|
3.2
|
13.7
|
1.0
|
N
|
C:GLU39
|
3.2
|
13.3
|
1.0
|
CZ
|
C:ARG174
|
3.4
|
13.8
|
1.0
|
NE2
|
C:GLN200
|
3.5
|
11.9
|
1.0
|
CD
|
C:GLN200
|
3.5
|
13.2
|
1.0
|
F1
|
C:ALF355
|
3.6
|
12.3
|
1.0
|
CG
|
C:GLU39
|
4.0
|
15.9
|
1.0
|
CA
|
C:GLU39
|
4.0
|
12.5
|
1.0
|
CA
|
C:GLY38
|
4.0
|
10.5
|
1.0
|
CG
|
C:LYS176
|
4.1
|
23.4
|
1.0
|
C
|
C:GLY38
|
4.1
|
8.6
|
1.0
|
PB
|
C:GDP351
|
4.2
|
9.6
|
1.0
|
CA
|
C:LYS176
|
4.6
|
17.1
|
1.0
|
CB
|
C:GLU39
|
4.6
|
13.5
|
1.0
|
CB
|
C:LYS176
|
4.6
|
19.4
|
1.0
|
NE
|
C:ARG174
|
4.7
|
12.9
|
1.0
|
CA
|
C:CA352
|
4.7
|
12.3
|
1.0
|
O3A
|
C:GDP351
|
4.8
|
12.1
|
1.0
|
O1B
|
C:GDP351
|
4.8
|
10.3
|
1.0
|
O2B
|
C:GDP351
|
4.8
|
7.7
|
1.0
|
N
|
C:GLY199
|
4.9
|
11.4
|
1.0
|
N
|
C:THR177
|
4.9
|
14.9
|
1.0
|
O
|
C:THR177
|
4.9
|
15.7
|
1.0
|
CD
|
C:LYS176
|
5.0
|
29.5
|
1.0
|
O
|
C:HOH617
|
5.0
|
19.6
|
1.0
|
|
Reference:
J.Sondek,
D.G.Lambright,
J.P.Noel,
H.E.Hamm,
P.B.Sigler.
Gtpase Mechanism of Gproteins From the 1.7-A Crystal Structure of Transducin Alpha-Gdp-Aif-4. Nature V. 372 276 1994.
ISSN: ISSN 0028-0836
PubMed: 7969474
DOI: 10.1038/372276A0
Page generated: Wed Jul 31 12:56:42 2024
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