Fluorine in PDB 1uda: Structure of Udp-Galactose-4-Epimerase Complexed with Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose

Enzymatic activity of Structure of Udp-Galactose-4-Epimerase Complexed with Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose

All present enzymatic activity of Structure of Udp-Galactose-4-Epimerase Complexed with Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose:
5.1.3.2;

Protein crystallography data

The structure of Structure of Udp-Galactose-4-Epimerase Complexed with Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose, PDB code: 1uda was solved by J.B.Thoden, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	30.00 / 1.80
*Space group*	P 3₂ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	83.500, 83.500, 108.900, 90.00, 90.00, 120.00
*R / R_free (%)*	n/a / n/a

Other elements in 1uda:

The structure of Structure of Udp-Galactose-4-Epimerase Complexed with Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose also contains other interesting chemical elements:

Sodium

(Na)

3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Udp-Galactose-4-Epimerase Complexed with Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose (pdb code 1uda). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Structure of Udp-Galactose-4-Epimerase Complexed with Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose, PDB code: 1uda:

Fluorine binding site 1 out of 1 in 1uda

Go back to

Fluorine Binding Sites List in 1uda

Fluorine binding site 1 out of 1 in the Structure of Udp-Galactose-4-Epimerase Complexed with Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Udp-Galactose-4-Epimerase Complexed with Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F341 b:36.0 occ:1.00	F4'	A:UFG341	0.0	36.0	1.0
	C4'	A:UFG341	1.5	25.6	1.0
	C5'	A:UFG341	2.5	35.4	1.0
	C3'	A:UFG341	2.5	26.6	1.0
	C6'	A:UFG341	2.9	55.9	1.0
	O3'	A:UFG341	2.9	26.4	1.0
	CB	A:THR126	3.0	15.0	1.0
	C2'	A:UFG341	3.0	30.3	1.0
	O5'	A:UFG341	3.0	32.9	1.0
	OG1	A:THR126	3.2	23.9	1.0
	O6'	A:UFG341	3.3	35.1	1.0
	O	A:HOH522	3.4	13.6	1.0
	C1'	A:UFG341	3.6	61.8	1.0
	O	A:HOH602	3.8	34.8	1.0
	CA	A:THR126	3.9	4.1	1.0
	OG	A:SER124	4.0	26.0	1.0
	CG2	A:THR126	4.2	2.6	1.0
	N	A:THR126	4.2	14.9	1.0
	O2'	A:UFG341	4.3	20.9	1.0
	O3B	A:UFG341	4.5	27.4	1.0
	O	A:HOH866	4.6	31.5	1.0
	CE2	A:TYR149	4.7	22.4	1.0
	OH	A:TYR299	4.8	16.9	1.0
	CD2	A:TYR149	4.9	14.1	1.0
	CG2	A:VAL86	5.0	22.3	1.0

Reference:

J.B.Thoden, A.D.Hegeman, G.Wesenberg, M.C.Chapeau, P.A.Frey, H.M.Holden. Structural Analysis of Udp-Sugar Binding to Udp-Galactose 4-Epimerase From Escherichia Coli. Biochemistry V. 36 6294 1997.
ISSN: ISSN 0006-2960
PubMed: 9174344
DOI: 10.1021/BI970025J

Page generated: Wed Jul 31 12:59:38 2024

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