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Fluorine in PDB 1uyq: Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability

Enzymatic activity of Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability

All present enzymatic activity of Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability:
3.2.1.21;

Protein crystallography data

The structure of Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability, PDB code: 1uyq was solved by P.Isorna, J.Polaina, J.Sanz-Aparicio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.95 / 2.20
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 136.416, 136.416, 173.341, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 22.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability (pdb code 1uyq). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability, PDB code: 1uyq:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 1uyq

Go back to Fluorine Binding Sites List in 1uyq
Fluorine binding site 1 out of 2 in the Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:17.4
occ:1.00
F2 A:G2F501 0.0 17.4 1.0
C2 A:G2F501 1.4 17.8 1.0
C3 A:G2F501 2.4 18.4 1.0
C1 A:G2F501 2.5 19.2 1.0
OE1 A:GLU352 2.7 29.9 1.0
O A:HOH622 2.8 47.7 1.0
O3 A:G2F501 2.8 16.0 1.0
OD1 A:ASN165 2.9 19.4 1.0
CE1 A:HIS121 3.2 15.1 1.0
NE2 A:HIS121 3.3 16.5 1.0
OE1 A:GLU166 3.3 22.0 1.0
CD A:GLU166 3.5 21.4 1.0
ND2 A:ASN165 3.6 14.9 1.0
CG A:ASN165 3.6 19.1 1.0
O5 A:G2F501 3.7 18.3 1.0
CD A:GLU352 3.7 28.8 1.0
OE2 A:GLU166 3.7 21.0 1.0
C4 A:G2F501 3.8 15.5 1.0
CG A:GLU166 4.2 20.4 1.0
CZ2 A:TRP122 4.2 17.3 1.0
OE2 A:GLU352 4.2 36.7 1.0
C5 A:G2F501 4.2 17.6 1.0
CH2 A:TRP122 4.4 17.4 1.0
ND2 A:ASN294 4.5 23.6 1.0
ND1 A:HIS121 4.5 19.0 1.0
CD2 A:HIS121 4.5 15.9 1.0
NH2 A:ARG77 4.8 25.8 1.0
CG A:GLU352 4.8 27.0 1.0
O4 A:G2F501 4.9 17.9 1.0
CE2 A:TRP122 4.9 18.0 1.0

Fluorine binding site 2 out of 2 in 1uyq

Go back to Fluorine Binding Sites List in 1uyq
Fluorine binding site 2 out of 2 in the Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F502

b:25.1
occ:1.00
F A:NFG502 0.0 25.1 1.0
C2 A:NFG502 1.4 25.2 1.0
C1 A:NFG502 2.4 25.0 1.0
C3 A:NFG502 2.4 25.1 1.0
O1 A:NFG502 2.8 26.8 1.0
O3 A:NFG502 2.8 27.2 1.0
O A:HOH663 3.1 28.5 1.0
CD1 A:LEU203 3.4 18.6 1.0
O5 A:NFG502 3.7 22.8 1.0
C4 A:NFG502 3.8 24.0 1.0
C11 A:NFG502 4.0 28.9 1.0
C5 A:NFG502 4.2 23.9 1.0
CD2 A:LEU203 4.2 16.8 1.0
O11 A:NFG502 4.3 33.1 1.0
CG A:LEU203 4.5 17.9 1.0
C16 A:NFG502 4.8 29.8 1.0
O4 A:NFG502 4.8 24.6 1.0
N1 A:NFG502 4.9 31.4 1.0
C12 A:NFG502 4.9 30.7 1.0
CD1 A:ILE283 4.9 22.4 1.0

Reference:

P.Isorna, J.Polaina, J.Sanz-Aparicio. Mutated B-Glucosidase A From Paenibacillus Polymyxa Showing Increased Stability To Be Published.
Page generated: Sun Dec 13 11:33:25 2020

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